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Hr-Transcriptomic analysis of the localized acquired resistance (LAR) phenomenon in Arabidopsis thaliana

ABSTRACT: tri38-lar - hr - Analyse the transcriptome of Arabidopsis thaliana plants developing localized acquired resistance (LAR) and a hypersensitive response (HR). The goal is to identify genes inducing LAR and/or HR. Here, we want to analyse the transcriptome of Arabidopsis thaliana developing HR. To achieve this, we used Col0 leaf tissues developing an HR reaction after inoculation of the avirulent strain of PstDC3000 carrying the gene avrRpm1. Keywords: normal vs disease comparison

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE13389 | GEO | 2008/12/01

SECONDARY ACCESSION(S): PRJNA109815

REPOSITORIES: GEO

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hr-Transcriptomic analysis of the localized acquired resistance (LAR) phenomenon in Arabidopsis thaliana

Project description:tri38-lar - hr - Analyse the transcriptome of Arabidopsis thaliana plants developing localized acquired resistance (LAR) and a hypersensitive response (HR). The goal is to identify genes inducing LAR and/or HR. Here, we want to analyse the transcriptome of Arabidopsis thaliana developing HR. To achieve this, we used Col0 leaf tissues developing an HR reaction after inoculation of the avirulent strain of PstDC3000 carrying the gene avrRpm1. Keywords: normal vs disease comparison 1 dye-swap - CATMA arrays

2008-12-01 | E-GEOD-13389 | biostudies-arrayexpress

lar-Transcriptomic analysis of the localized acquired resistance (LAR) phenomenon in Arabidopsis thaliana

Project description:tri38-lar - lar - Analyse the transcriptome of Arabidopsis thaliana plants developing localized acquired resistance (LAR) and a hypersensitive response (HR). The goal is to identify genes inducing LAR and/or HR. Plants were treated either with PstDC3000 (avrRpm1)or MgCl2 (control plants). The samples were studied at 3 points of the infection kinetics of the LAR phenomenon: 6h, 24h and 48h. Keywords: normal vs disease comparison

2008-12-01 | GSE13390 | GEO

lar-Transcriptomic analysis of the localized acquired resistance (LAR) phenomenon in Arabidopsis thaliana

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Arabidopsis thaliana

Project description:hr-Transcriptomic analysis of the localized acquired resistance (LAR) phenomenon in Arabidopsis thaliana

| PRJNA109815 | ENA

Robust transcriptional indicators of plant immune cell death revealed by spatio-temporal transcriptome analyses

Project description:We aim to monitor global transcriptomic changes during the HR in Arabidopsis Col-0 leaf upon localized infiltration of Pst DC3000 (avrRpm1) (5*107cfu/mL) and mock (10 Mm MgCl2) in a spatio-temporal manner. The infiltrated cells were harvested in parallel with the immediately adjacent uninfected cells. Samples were collected at 0,1,2,4,6 post-inoculation in three biological replicates.

2022-05-23 | GSE198022 | GEO

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Project description:Arabidopsis thaliana strain:Col0 Raw sequence reads

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Project description:Arabidopsis thaliana strain:col0 Raw sequence reads

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RNA-seq analysis of frs7;frs12;ninja-1 triple loss-of-function seedlings

Project description:Gene expression analysis of Arabidopsis thaliana frs7;frs12;ninja-1triple mutant line in comparison with control lines (frs7;frs12, ninja-1 and Col0).

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