Genomics

Dataset Information

0

Attenuated retinoic acid signaling is among the early responses in mouse uterus approaching embryo attachment


ABSTRACT: The uterus is transiently receptive for embryo implantation. It remains to be understood why the uterus does not reject semi-allogeneic or allogeneic embryos for implantation. Uterine early response genes at the time approaching embryo attachment may provide insights. Uteri from C57BL/6 pseudo-pregnant (PP) mice and pregnant (P) mice approaching embryo attachment on day 3 post-coitum (D3) @22 h were analyzed for early response genes by microarray. SAM algorithm retained 21,858 unique probesets. Principal component analysis (PCA) indicated a clear separation between the PP and P groups. There were 105 upregulated and 5 downregulated protein-coding genes in the pregnant uterus (fc>1.5 & q-value<5%). Gene ontology (GO) analysis of these upregulated genes revealed that 84% of the GO terms were related to immune responses, with a dominant natural killer (NK) cell activation signature. Among the top 8 upregulated protein-coding genes, Cyp26a1 inactivates retinoic acid (RA) while Lrat promotes vitamin A storage, both of which attenuate RA bioavailability; Atp6v0d2 and Gjb2 play roles in ion transport and transmembrane transport; Gzmb, Gzmc, and Il2rb are involved in immune responses; and Tdo2 is important for kynurenine pathway. Most of these genes or their related pathways have been implicated in immune regulations. RA signaling has been implicated in tolerance and immunity and uterine NK cells have been implicated in immunotolerance at the maternal-fetal interface in the placenta. The mechanisms of immune responses approaching embryo attachment remain to be elucidated. The coordinated effects of the early response genes may hold the keys to the question of why the uterus does not reject an implanting embryo.

ORGANISM(S): Mus musculus

PROVIDER: GSE247638 | GEO | 2023/11/15

REPOSITORIES: GEO

Similar Datasets

2015-12-10 | E-GEOD-68432 | biostudies-arrayexpress
2023-11-20 | GSE237740 | GEO
2015-12-10 | E-GEOD-68433 | biostudies-arrayexpress
2005-12-31 | GSE3225 | GEO
2011-01-27 | E-GEOD-26746 | biostudies-arrayexpress
2008-04-04 | E-GEOD-10913 | biostudies-arrayexpress
2020-05-04 | MTBLS627 | MetaboLights
2013-05-03 | E-GEOD-43501 | biostudies-arrayexpress
2020-07-01 | GSE120510 | GEO
2008-06-12 | E-GEOD-4002 | biostudies-arrayexpress