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Engineered Living Systems with Self-Organizing Neural Networks: From Anatomy to Behavior and Gene Expression

ABSTRACT: A great deal is known about the formation and architecture of biological neural networks in animal models, which have arrived at their current structure-function relationship through evolution by natural selection. Little is known about the development of such structure-function relationships in a scenario where neurons are allowed to grow within evolutionarily-novel, motile bodies. Previous work showed that ectodermal tissue excised from Xenopus embryos, develops into a three-dimensional (3D) mucociliary epidermal organoid ex vivo and exhibits movements distinct from age-matched tadpoles. These ‘biobots’ are autonomous, self-powered, and able to move through aqueous environments. Here we report a new type of biobot, the neurobot, composed of mucociliary epidermis and neural tissue. We show that neural precursor cells implanted in explanted Xenopus ectodermal tissue develop into mature neurons, extending processes both towards the surface and among each other. These self-organized neurobots exhibit unique morphology, more complex movements, and different responses to neuroactive drugs compared to non-neuronal counterparts. Calcium imaging confirms neuronal activity in neurobots. Transcriptomics reveals increased transcript variability, expression of genes related to nervous system development, a shift toward ancient genes, and up-regulation of neuronal genes linked to visual perception.

ORGANISM(S): Xenopus laevis

PROVIDER: GSE295614 | GEO | 2026/02/05

REPOSITORIES: GEO

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Project description:Transcriptional targets of neurogenin (Ngnr1) were identified by over-expression of an inducible form of neurogenin in Xenopus ectodermal explants. The effects of co-expressing the nucleoprotein geminin on Ngnr1-dependent target gene transactivation were defined. Regulating the transition from lineage-restricted progenitors to terminally differentiated cells is a central aspect of nervous system development. Here, we investigated the role of the nucleoprotein geminin in regulating neurogenesis at a mechanistic level during both Xenopus primary neurogenesis and mammalian neuronal differentiation in vitro. The latter work utilized both neural cells derived from embryonic stem and embryonal carcinoma cells in vitro and neural stem cells from mouse forebrain. In all of these contexts, geminin antagonized the ability of neural bHLH transcription factors to activate transcriptional programs promoting neurogenesis. Furthermore, geminin promoted a bivalent chromatin state, characterized by the presence of both activating and repressive histone modifications, at genes encoding transcription factors that promote neurogenesis. This epigenetic state restrains the expression of genes that regulate commitment of undifferentiated stem and neuronal precursor cells to neuronal lineages. Geminin is highly expressed in undifferentiated neuronal precursor cells but is downregulated prior to differentiation. Therefore, these data support a model whereby geminin promotes the neuronal precursor cell state by modulating both the epigenetic status and expression of genes encoding neurogenesis-promoting factors. Additional developmental signals acting in these cells can then control their transition toward terminal neuronal or glial differentiation during mammalian neurogenesis. A dexamethasone-inducible (GR ligand binding domain fused) form of Xenopus neurogenin-related 1, NgnrGR, was over-expressed in Xenopus embryonic ectodermal explants, in the presence or absence of over-expressed geminin. Induction of Ngnr1 activity was used to define direct targets as previously described (EMBO J. 26(24): 5093-5108). The ability of geminin to suppress Ngnr1-dependent transactivation of its target gene programs was determined.

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Engineered Living Systems with Self-Organizing Neural Networks: From Anatomy to Behavior and Gene Expression

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