Dataset Information

Single cell sequencing data supporting "IL-4/C1q activated astrocyte-derived extracellular vesicles promote stroke infarct recovery by recruiting peripheral leukocytes"

ABSTRACT: This study aims to engineer an injectable biomaterial platform to promote brain repair post-stroke. We used extracellular vesicles derived from reactive astrocytes and decorated them onto the surface of hydrogel microparticles. Then they were injected into stroke cavity and crosslinked into porous scaffold in situ, which enabled persistent and uniform distribution of astrocyte-derived extracellular vesicles. Extracellular vesicles from reactive astrocytes activated with different cytokines showed different brain regeneration outcomes. IL-4/C1q activated astrocyte extracellular vesicles promoted robust angiogenesis within the stroke infarct and improved functional recovery significantly. Single-cell RNA sequencing was performed to characterize cellular and transcriptional changes in the post-stroke brain following implantation of extracellular vesicle-functionalized hydrogel microparticles. Briefly, ischemic stroke was induced in mice, and different hydrogel microsphere formulations were implanted into the infarct cavity at 5 days post-stroke. Ipsilateral hemispheres were collected at day 14 and dissociated into single-cell suspensions for transcriptomic profiling. The dataset was used to evaluate treatment-associated differences in cell composition, immune infiltration, vascular remodeling, and regenerative responses in the injured brain. From these data, we showed that IL-4/C1q extracellular vesicle group recruited reparative macrophages and neutrophils to promote brain repair post-stroke.

ORGANISM(S): Mus musculus

PROVIDER: GSE335511 | GEO | 2026/07/10

REPOSITORIES: GEO

ACCESS DATA

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Project description:Genes upregulated in stroke infiltrating stem cells were compared against the parent non-infiltrated mouse stem cell line derived from immortomouseTM. Abstract Background and Purpose- Although the therapeutic potential of bone marrow-derived stem cells (SC) has been addressed in different experimental models of ischemic stroke, it is still unclear how SC induce neuroprotection following stroke. In this study, we describe a novel method for recovering SC infiltrating post-stroke brain tissue allowing the determination of genes which become persistently activated / or depressed (compared to their naïve counterparts) during SC-mediated neuroprotection. Methods- Ischemic stroke was induced in C57BL/6 mice by middle cerebral artery occlusion for 1 h, followed by reperfusion. SC were isolated from H-2Kb-tsA58 (immortomouseTM) mice, and were administered (i.v.) 24 h after reperfusion. At the onset of therapeutic improvement (14 days after ischemia), infarcted brain tissue was isolated and infarct-infiltratng SC cultured at 33°C. Microarray analysis and RT-PCR were performed to compare persistent differential gene expression between naïve and infiltrating SC populations. Results- Z-scoring revealed dramatic changes in extracellular genes of analyzed cells. Pair-wise analysis detected 80 extracellular factor genes that were up-regulated ( 2 fold, P<0.05, Benjamini-Hochberg correction) between naïve and infiltrated SC. Although several conventional neuroregenerative, nerve guidance and angiogenic factors (bFGF, bone morphogenetic protein, angiopoietins, neural growth factors were among the expressed genes detected we identified Cytokine receptor-like factor 1 (Crlf1), Fgf7, family with sequence similarity 19, member A5 (Fam19a5), Glypican 1 (Gpc1), Dickkopf homolog 2 (Dkk2), Endothelial cell-specific molecule 1, Osteopontin (OPN)35, Tissue factor pathway inhibitor 2, Masp3 mRNA for MBL-associated serine protease-3, Glial cell line derived neurotrophic factor (Gdnf), Bone morphogenetic protein 2 (Bmp2), Olfactomedin 1, Sushi-repeat-containing protein, X-linked 2 (Srpx2). Conclusions- SC infiltrating the post-i schemic brain assume a persistently altered pattern of expressed extracellular genes compared to naïve SC that contributes to neuroprotection, regeneration and angiogenesis in infarcts. Keywords: Gene activation / suppression study Comparison of persistent stem cell gene expression induced by stroke-infarct infiltration

Dataset Information

Single cell sequencing data supporting "IL-4/C1q activated astrocyte-derived extracellular vesicles promote stroke infarct recovery by recruiting peripheral leukocytes"

Dataset's files

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets