Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ChIP-chip of Geobacter sulfurreducens PCA with antibody against various sigma factors under various conditions

ABSTRACT: We applied a ChIP-chip approach to elucidate the binding profiles of sigma factors (RpH, RpoN and RpoS) experimentally under different growth conditions. This technique localizes DNA fragments within DNA-protein complexes enriched by chromatin immunoprecipitation using high-density oligonucleotide tilling arrays.

ORGANISM(S): Geobacter sulfurreducens PCA

PROVIDER: GSE37778 | GEO | 2013/05/01

SECONDARY ACCESSION(S): PRJNA163261

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

ChIP-chip of Geobacter sulfurreducens PCA with antibody against various sigma factors under various conditions

Project description:We applied a ChIP-chip approach to elucidate the binding profiles of sigma factors (RpH, RpoN and RpoS) experimentally under different growth conditions. This technique localizes DNA fragments within DNA-protein complexes enriched by chromatin immunoprecipitation using high-density oligonucleotide tilling arrays. A 10 ChIP-chip study using immunoprecipitated DNA (IP-DNA) from three culture condtions against three alternative sigma factors . The high-density oligonucleotide tiling arrays used were consisted of 381,174 oligonucleotide probes spaced 20 bp apart (30-bp overlap between two probes) across the G.sulfurreducens genome (NimbleGen). Experiments were conducted as three bioliogical replicates (different cultures).

2013-05-01 | E-GEOD-37778 | biostudies-arrayexpress

ChIP-chip of Geobacter sulfurreducens PCA with antibody against RpoN under various conditions.

2010-06-30 | GSE17837 | GEO

ChIP-chip of Geobacter sulfurreducens PCA with antibody against RNAP and RpoD under various conditions

2010-07-01 | GSE22503 | GEO

ChIP-chip of Geobacter sulfurreducens PCA with antibody against RpoN under various conditions.

Project description:We applied a ChIP-chip approach to elucidate the σN regulon experimentally under different growth conditions. This technique localizes DNA fragments within σN complexes enriched by chromatin immunoprecipitation using high-density oligonucleotide tilling arrays. A nine ChIP-chip study using immunoprecipitated DNA (IP-DNA) from three separate culture conditions. The high-density oligonucleotide tiling arrays used were consisted of 381,174 oligonucleotide probes spaced 20 bp apart (30-bp overlap between two probes) across the G.sulfurreducens genome (NimbleGen). Experiments were conducted as three bioliogical replicates (different cultures)

2010-06-30 | E-GEOD-17837 | biostudies-arrayexpress

Geobacter sulfurreducens PCA

Project description:ChIP-chip of Geobacter sulfurreducens PCA with antibody against RpoN under various conditions.

| PRJNA123289 | ENA

ChIP-chip of Geobacter sulfurreducens PCA with antibody against RNAP and RpoD under various conditions

Project description:We applied a ChIP-chip approach to elucidate the binding profiles of RNAP and RpoD experimentally under different growth conditions. This technique localizes DNA fragments within DNA-protein complexes enriched by chromatin immunoprecipitation using high-density oligonucleotide tilling arrays. A 21 ChIP-chip study using immunoprecipitated DNA (IP-DNA) from three culture conditions for RNAP and four culture conditions for RpoD. The high-density oligonucleotide tiling arrays used consisted of 381,174 oligonucleotide probes spaced 20 bp apart (30-bp overlap between two probes) across the G. sulfurreducens genome (NimbleGen). Experiments were conducted as three bioliogical replicates (different cultures).

2010-07-01 | E-GEOD-22503 | biostudies-arrayexpress

Geobacter sulfurreducens grown in various conditions: gene expression and RpoN ChIP-chip

Project description:This SuperSeries is composed of the following subset Series: GSE17834: Transcriptome analysis of Geobacter sulfurreducens grown with different nitrogen sources GSE17837: ChIP-chip of Geobacter sulfurreducens PCA with antibody against RpoN under various conditions. Refer to individual Series

2010-06-28 | E-GEOD-17838 | biostudies-arrayexpress

Geobacter sulfurreducens

Project description:Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens

| PRJNA100825 | ENA

Geobacter sulfurreducens PCA

Project description:Analysis of the iron stimulon and fur regulon of Geobacter sulfurreducens [ChIP-chip]

| PRJNA236127 | ENA

Geobacter sulfurreducens PCA

Project description:Analysis of the iron stimulon and fur regulon of Geobacter sulfurreducens [expression]

| PRJNA236126 | ENA