Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS_synalissa_Extract_positive_mode

ABSTRACT: Total extract of Synalissa symphorea (cyanolichens) collected in Autria, near Graz

INSTRUMENT(S): Ion Trap LC/MS Thermo

ORGANISM(S): Cyanolichens

SUBMITTER: Delphine Parrot; Sophie Tomasi

PROVIDER: MSV000079477 | GNPS | Fri Jan 22 01:11:00 GMT 2016

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - Collema_auriforme_Total_Extract (Cyanolichen)

Project description:Total extract of Collema auriforme (a cyanolichen collected in Austria, near Graz) in positive mode

2016-01-21 | MSV000079473 | GNPS

GNPS - Collema_cristatum_total_extract (cyanolichens)

Project description:Total extract of Collema cristatum (a cyanolichen collected in Austria, near Graz) in positive mode

2016-01-21 | MSV000079474 | GNPS

Identification of AtALKBH1A and AtALKBH1B as DNA N6-adenine demethylases in Arabidopsis thaliana

Project description:Wild type and alkbh1a/1b seeds were stratified for two days, dry and stratified seeds were collected to extract total RNA for mRNA-seq. We then performed gene expression profiling analysis using data obtained from mRNA-seq.

2024-03-04 | GSE237118 | GEO

METTL4-mediated N6-methyladenine DNA modification regulates thermotolerance in Arabidopsis thaliana

Project description:Wild type and atdamt1 seedlings were heat treated for 2.5 hours, control and treated seedlings were collected to extract total RNA for mRNA-seq. We then performed gene expression profiling analysis using data obtained from mRNA-seq.

2023-11-20 | GSE237262 | GEO

GNPS_Collemataceae_extracts_positive_mode

Project description:Total extracts of four Collemataceae (C. auriforme, C. cristatum, C. fuscovirens and Leptogium lichenoides) collected in Austria, near Graz

2016-01-22 | MSV000079475 | GNPS

Transcriptomic analyses of a Cyberlindnera jadinii strain (NBRC0988) grown in glycerol

Project description:A strand-specific RNA-seq library was constructed for a single sample, specifically the wild-type strain NBRC0988 grown in Yeast Extract Peptone (YP) medium supplemented with 2% w/v glycerol. To prepare the RNA sample, NBRC0988 cells grown overnight were inoculated into 100 mL of liquid Yeast Extract Peptone Dextrose (YPD) medium, with an initial inoculation OD600 of 0.1. These cells were then cultured for 15 hours at 30°C and 250 rpm. Subsequently, the cells were collected by centrifugation at 6,000g for 5 minutes. After being washed twice with phosphate buffer saline (PBS), they were inoculated into fresh 100 mL of YP medium containing 2% w/v glycerol. Following flask culturing at 30°C and 250 rpm for an additional 5 hours, the yeast cells were collected by centrifugation for total RNA isolation and Illumina RNA-seq library construction. Total RNA from the sample was isolated using the TRIzol reagent (Invitrogen, Grand Island, USA) and then utilized for high-throughput RNA sequencing. Commercially, the 150-nt paired-end strand-specific RNA-seq libraries (SS_lib_type RF) were generated by Novogene Biotechnology Co. Ltd (Tianjin, China) using the Illumina's Novaseq 6000 platform (Illumina, San Diego, USA).

2024-03-14 | GSE261259 | GEO

Transcriptome profiles of sturgeon lateral line electroreceptor and mechanoreceptor during regeneration

Project description:The larvae were treated with 200 μM neomycin to deplete the hair cells in neuromast and ampullary organ. Two kinds of sensory epithelia at the ventral side of head were separated at 12 hour-post treatment (hpt) and 24 hpt, respectively. Mechano- and electro- sensory epithelia before neomycin treating were collected respectively as control (untreated).The epithelia near but without two kinds of sensors (EPs) were also collected. Total RNAs were extracted by TRIzol (Invitrogen) using standard protocols. RNA libraries were prepared by TruSeq RNA Sample Prep Kit (Illumina), following the manufacturer's instructions.

2020-12-15 | GSE151096 | GEO

Mapping the total transcriptome at near cellular resolution

Project description:Mapping the total transcriptome at near cellular resolution

| PRJNA1405600 | ENA

Expression change in materal and fetal part of Cxcl14-/- placenta

Project description:Cxcl14+/- mice were mated with Cxcl14+/- mice, the embryos of pregnant females were collected on E13.5. After genotyping, the maternal part and fetal part of Cxcl14-/- and Cxcl14+/+ placentas were dissect out to extract total RNA respectively (n = 3). Total RNA was extracted using PureYield™ RNA Midiprep System (Promega).The maternal part of placenta that contained mesometrial lymphoid aggregate of pregnancy (MLAp) and decidua basalis (DB); the fetal part ofplacenta consisted of spongiotrophoblast and labyrinthin layer.Microarray hybridization was performed using a Mouse NimbleGen cDNA Microarray Kit (Roche), at CapitalBio Co., Ltd.(Beijing,China). Primary data were scaned using NimbleGen MS200 (Roche), and then extracted using NimbleScan system (Roche).

2013-06-19 | GSE48095 | GEO

Transcriptomic response of Mycobacterium tuberculosis to artemisinin, Artemisia annua extract, and Artemisia afra extract

Project description:We sought to determine the transcriptomic impacts of artemisinin, Artemisia annua extract, and Artemisia afra extract on M. tuberculosis. Log phase cultures were treated with lethal doses for four hours or with inhibitory or sub-inhibitory doses for 24 hours. RNA was collected from untreated controls at the same timepoint.

2023-09-28 | GSE244235 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data