Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Crosslinking-MS analysis of Saccharomyces cerevisiae cohesin with or without binding of Mrc1

ABSTRACT: Crosslinking-MS analysis of Saccharomyces cerevisiae cohesin complex with or without binding with Mrc1.

ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast)

SUBMITTER: Juri Rappsilber

PROVIDER: PXD039609 | JPOST Repository | Thu May 04 00:00:00 BST 2023

REPOSITORIES: jPOST

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	B221007_06_Lumos_ZC_CO_140_cohesinNoMrc1_SECf6-1.raw	Raw
	B221007_07_Lumos_ZC_CO_140_cohesinNoMrc1_SECf6-2.raw	Raw
	B221007_08_Lumos_ZC_CO_140_cohesinNoMrc1_SECf7-1.raw	Raw
	B221007_09_Lumos_ZC_CO_140_cohesinNoMrc1_SECf7-2.raw	Raw
	B221007_11_Lumos_ZC_CO_140_cohesinNoMrc1_SECf8-1.raw	Raw

Items per page:

1 - 5 of 20

Similar Datasets

Genome wide profiling of RNA polymerase III in Saccharomyces cerevisiae

Project description:Genome wide mapping of RNA polymearase III binding sites in Saccharomyces cerevisiae under normal growth and nutrient starved condition using ChIP-seq. Chromatin Immuno-precipitation (ChIP) was performed for FLAG tagged version of pol III subunit RPC128 after crosslinking the log-phase cells with formaldehyde. MOCK and IP DNA was sequenced and coverage of pol III was calculated at each base of the genome.

2013-06-21 | GSE39566 | GEO

RNA binding of Saccharomyces cerevisiae Ssd1

Project description:We quantified the exact RNA binding sites of the Ssd1 protein in Saccharomyces cerevisiae, in exponential growth and heat shock conditions, using the CRAC protocol. We used a His-TEV-protein A tag (HTP) on the C-terminal of the genomic copy of Ssd1, with the 3'UTR replaced by the 3'UTR/terminator from the K. lactis Ssd1 homolog, followed by a KlURA3 selection marker.

2020-10-23 | GSE159835 | GEO

RNA binding of Saccharomyces cerevisiae Ssd1

Project description:RNA binding of Saccharomyces cerevisiae Ssd1

| PRJNA670648 | ENA

Expression data from Saccharomyces cerevisiae

Project description:Saccharomyces cerevisiae is an excellent microorganism for industrial succinic acid production, but high succinic acid concentration will inhibit the growth of Saccharomyces cerevisiae then reduce the production of succinic acid. Through analysis the transcriptomic data of Saccharomyces cerevisiae with different genetic backgrounds under different succinic acid stress, we hope to find the response mechanism of Saccharomyces cerevisiae to succinic acid.

2022-01-09 | GSE193190 | GEO

Proteome of saccharomyces cerevisiae

Project description:LPS was used as a stressor to stimulate the model organism Saccharomyces cerevisiae. To detect extracellular metabolic information of VOCs. To provide a molecular basis for cellular metabolism of VOCs by proteome.

2023-12-18 | PXD047920 |

Saccharomyces cerevisiae

Project description:MEDIATOR subunit med8 binding in Saccharomyces cerevisiae

| PRJNA138751 | ENA

Saccharomyces cerevisiae

Project description:RNA-Binding Protein targets in Saccharomyces cerevisiae

| PRJNA128127 | ENA

Expression data from Saccharomyces cerevisiae

Project description:Industrial bioethanol production may involve a low pH environment,improving the tolerance of S. cerevisiae to a low pH environment caused by inorganic acids may be of industrial importance to control bacterial contamination, increase ethanol yield and reduce production cost. Through analysis the transcriptomic data of Saccharomyces cerevisiae with different ploidy under low pH stress, we hope to find the tolerance mechanism of Saccharomyces cerevisiae to low pH.

2022-12-09 | GSE210964 | GEO

Genome wide profiling of RNA polymerase III in Saccharomyces cerevisiae

2013-06-21 | E-GEOD-39566 | biostudies-arrayexpress

MEDIATOR subunit med8 binding in Saccharomyces cerevisiae

Project description:The Mediator complex transmits activation signals from DNA bound transcription factors to the core transcription machinery. Genome wide localization studies have demonstrated that Mediator occupancy not only correlates with high levels of transcription, but that the complex also is present at transcriptionally silenced locations. We provide evidence that Mediator localization is guided by an interaction with histone tails, and that this interaction is regulated by their post-translational modifications. A quantitative, high-density genetic interaction map revealed links between Mediator components and factors affecting chromatin structure, especially histone deacetylases. Peptide binding assays demonstrated that pure wild type Mediator forms stable complexes with the tails of Histone H3 and H4. These binding assays also showed Mediator – histone H4 peptide interactions are specifically inhibited by acetylation of the histone H4 lysine 16, a residue critical in transcriptional silencing. Finally, these findings were validated by tiling array analysis, that revealed a broad correlation between Mediator and nucleosome occupancy in vivo, but a negative correlation between Mediator and nucleosomes acetylated at histone H4 lysine 16. Our studies show that chromatin structure and the acetylation state of histones are intimately connected to Mediator localization. Med8-TAP strain ChIPed with IgG beads vs. Input in Saccharomyces cerevisiae

2011-11-22 | E-GEOD-28613 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data