Proteomics

Dataset Information

0

Minimizing Taxonomic and Natural Product Redundancy in Microbial Libraries Using MALDI-TOF MS and the Bioinformatics Pipeline IDBac

ABSTRACT: This bacterial MALDI-TOF dataset was used for the study "AMinimizing Taxonomic and Natural Product Redundancy in Microbial Libraries Using MALDI-TOF MS and the Bioinformatics Pipeline IDBac" It consists of triplicate MALDI-TOF MS profiles (both reflectron and linear datasets) for >1,600 bacteria cultivated from a collection in Iceland.

INSTRUMENT(S): autoflex

ORGANISM(S): Multiple

SUBMITTER: Laura Sanchez   Brian Murphy  

PROVIDER: MSV000083461 | MassIVE | Mon Feb 18 16:57:00 GMT 2019

REPOSITORIES: MassIVE

Json Xml
altmetric image

Publications

Minimizing Taxonomic and Natural Product Redundancy in Microbial Libraries Using MALDI-TOF MS and the Bioinformatics Pipeline IDBac.

Costa Maria S MS   Clark Chase M CM   Ómarsdóttir Sesselja S   Sanchez Laura M LM   Murphy Brian T BT  

Journal of natural products 20190723 8

Libraries of microorganisms have been a cornerstone of drug discovery efforts since the mid-1950s, but strain duplication in some libraries has resulted in unwanted natural product redundancy. In the current study, we implemented a workflow that minimizes both the natural product overlap and the total number of bacterial isolates in a library. Using a collection expedition to Iceland as an example, we purified every distinct bacterial colony off isolation plates derived from 86 environmental sam  ...[more]

Similar Datasets

Genomics WGS evaluation of MALDI-TOF MS for Streptococcus suis
| PRJEB45445 | ENA
Genomics An improved MALDI-TOF MS data analysis pipeline for the identification of carbapenemase-producing Klebsiella pneumoniae
| PRJEB43543 | ENA
Unknown Minimizing Taxonomic and Natural Product Redundancy in Microbial Libraries Using MALDI-TOF MS and the Bioinformatics Pipeline IDBac.
| S-EPMC7197193 | biostudies-literature
Proteomics wheat, pollen, MALDI-TOF/TOF-MSMS
2019-04-09 | PXD012519 | Pride
Proteomics Shingobium sp. strain Chol11 MALDI-TOF MS
2021-04-21 | PXD022404 | Pride
Proteomics Metabolite analysis based on MALDI-TOF MS
2021-12-28 | PXD030653 | iProX
Proteomics Podophyllum Hexandrum Royle MALDI-TOF-MS/MS
2023-03-10 | PXD005640 | Pride
Proteomics Biofilm Formation Risk Assessment for Psychrotrophs in Raw Milk by MALDI-TOF mass spectrometry
2022-04-29 | PXD033561 | iProX
Genomics MALDI-TOF typing of Serratia marcescens, Klebsiella oxytoca, and Citrobacter freundii for fast discrimination of isolates during outbreaks
| PRJEB18796 | ENA
Proteomics MALDI-TOF MS data of bacteria collected in Vietnam
2022-03-14 | MSV000089059 | MassIVE