Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli isolate:chicken farm

ABSTRACT: Escherichia coli isolate:chicken farm Genome sequencing

PROVIDER: PRJNA595645 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Escherichia coli strain:chicken | isolate:chicken

Project description:Escherichia coli strain:chicken | isolate:chicken Raw sequence reads

| PRJNA764072 | ENA

Transcriptome of chicken spleens with Escherichia coli infection

Project description:Purpose: the goals of this study was to find the differential genes of spleen in chickens infected with Escherichia coli Methods: The spleen samples from control group and the spleen samples from infection group were generated by deep sequencing using Illumina system with 9 biological repetitions and 2 technical repetitions, respectively. Results: Using an optimized data analysis workflow, we mapped about 68-91 million sequence reads per sample to the chicken spleens from the infection and control group by Hisat2. Approximately a quarter of the transcripts showed differential expression between the infection and control group, with a 5x SD fold change and p value <0.05.

2023-01-11 | GSE182967 | GEO

Psychological Evaluation According Colonic Colonization by Escherichia Coli of Patients After Colorectal Surgery

Project description:The purpose of this study is to determine whether the presence of pathogenic Escherichia coli in colon is associated with psychiatric disorders.

| 2230352 | ecrin-mdr-crc

Escherichia coli strain:ECY44 | isolate:Chicken

Project description:Escherichia coli strain:ECY44 | isolate:Chicken Genome sequencing and assembly

| PRJNA700460 | ENA

Escherichia coli strain:Droppings of Chicken | isolate:Droppings of Chicken

Project description:Escherichia coli strain:Droppings of Chicken | isolate:Droppings of Chicken Genome sequencing

| PRJNA704224 | ENA

chicken farm dust

Project description:Chicken farm dust - raw sequence reads

| PRJNA701384 | ENA

Enteropathogenic Escherichia Coli (EPEC): Does it Have a Role in Colorectal Tumourigenesis?

Project description:Despite the characterization of many aetiologic genetic changes. The specific causative factors in the development of sporadic colorectal cancer remain unclear. This study was performed to detect the possible role of Enteropathogenic Escherichia coli (EPEC) in developing colorectal carcinoma.

| 2184564 | ecrin-mdr-crc

Transcriptome analysis of avian pathogenic Escherichia coli O1 in chicken serum compared to LB

Project description:Colisepticemia caused by avian pathogenic Escherichia coli (APEC) results in annual multimillion dollar losses to the poultry industry. Recent research suggests that APEC may have an important role in public health as well. Generally, colisepticemia follows a respiratory tract infection in which APEC penetrate the respiratory epithelium to enter the bloodstream. From the bloodstream, bacteria may spread to various internal organs resulting in perihepatitis, pericarditis, and other conditions. The aim of this study was to identify molecular mechanisms enabling APEC to survive and grow in the bloodstream. To do so, we compared the transcriptome of APEC O1 during growth in Luria-Bertani broth and chicken serum. Selected genes that were significantly up-regulated in chicken serum were then subjected to mutational analysis to confirm their role in APEC pathogenesis. Several categories of genes, predicted to contribute to adaptation and growth in the avian host, were identified. These included several known virulence genes and genes involved in adaptive metabolism, protein transport, biosynthesis pathways, stress resistance, and virulence regulation. Several genes with unknown function, which were localized to pathogenicity islands or APEC O1’s large virulence plasmid, were also identified, suggesting that they too contribute to survival in chicken serum. This genome-wide analysis provides novel insight into processes that are essential to APEC O1’s survival and growth in chicken serum.

2011-04-01 | GSE25478 | GEO

Gene expression from Escherichia coli.

Project description:Gene expression from Escherichia coli.

2013-07-12 | GSE48776 | GEO

Transcriptome analysis of avian pathogenic Escherichia coli O1 in chicken serum compared to LB

2011-03-31 | E-GEOD-25478 | biostudies-arrayexpress