Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA sequencing of the ventral rhombomere 1 of the developing mouse

ABSTRACT: RNA sequencing of the ventral rhombomere 1 of the developing mouse

PROVIDER: PRJNA663553 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNAsequencing of the ventral rhombomere 1 of the developing mouse [bulk RNA-seq]

Project description:Sequencing of the mouse ventral rhombomere 1 tissues and cells to characterize the Tal1-dependent and -independent neuronal precursor groups. The data allowed to describe the cell types in the R1 brain region, and map gene expression dynamics during bifurcation of the GABAergic and glutamatergic lineages. Our results provide a framework for understanding the development of cellular diversity in the tegmental nuclei.

2020-10-10 | GSE157961 | GEO

RNAsequencing of the ventral rhombomere 1 of the developing mouse [bulk RNA-seq]

Project description:RNAsequencing of the ventral rhombomere 1 of the developing mouse [bulk RNA-seq]

| PRJNA663555 | ENA

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [INDROPS]

Project description:Sequencing of the mouse ventral rhombomere 1 tissues and cells to characterize the Tal1-dependent and -independent neuronal precursor groups. The data allowed to describe the cell types in the R1 brain region, and map gene expression dynamics during bifurcation of the GABAergic and glutamatergic lineagesOur results provide a framework for understanding the development of cellular diversity in the tegmental nuclei.

2020-10-10 | GSE157962 | GEO

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [10X Genomics]

Project description:Sequencing of the mouse ventral rhombomere 1 tissues and cells to characterize the Tal1-dependent and -independent neuronal precursor groups. The data allowed to describe the cell types in the R1 brain region, and map gene expression dynamics during bifurcation of the GABAergic and glutamatergic lineagesOur results provide a framework for understanding the development of cellular diversity in the tegmental nuclei.

2020-10-10 | GSE157963 | GEO

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [INDROPS]

Project description:Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [INDROPS]

| PRJNA663554 | ENA

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [10X Genomics]

Project description:Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [10X Genomics]

| PRJNA663556 | ENA

RNA sequencing of the ventral rhombomere 1 of the developing mouse

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-10-10 | GSE157964 | GEO

Gene expression differences between Gata2cko and wt mouse rhombomere 1

Project description:During development, rhombomere 1 gives rise to a multitude of cell types, including serotonergic as well as glutamatergic neurons that populate the raphe nuclei. Transcription factor Gata2 has been shown to regulate the development of the serotonergic neurons in the rhombomere 1. To further understand the role and targets of Gata2 in the rhombomere 1 during development, we used cDNA microarrays to compare gene expression in the embryonic day 12.5 (E12.5) rhombomere 1 tissues extracted from wild-type and Gata2 mutant embryos.

2016-11-01 | GSE89354 | GEO

Transcriptome-based analysis of developing dorsal and ventral hippocampus

Project description:We report the differentiation of dorsal and ventral hippocampus in developing rats by performing and analyzing transcriptome profiling.

2017-12-17 | GSE96079 | GEO

Transcription profiling of mouse rhombomere 4 at E10.5 from knockins of Hoxb1 gene expressing Hox-A1 protein

Project description:This study analyzed mRNA profiles in rhombomere 4 of E10.5 mouse knock-in embryos expressing either normal endogenous Hox-B1 protein or the paralogous Hox-A1 protein from the Hoxb1 locus. The Hox-A1 protein was found to be detectably less efficacious than Hox-B1 in promoting neurogenesis in the basal plate of rhombomere 4 and its transcriptional profile shared several similarities with the Hoxb1 mutant. Experiment Overall Design: GFP-positive cells were FACS-sorted from dissected hindbrains of entire litters of E10.5 mouse embryos expressing either normal endogenous Hox-B1 protein or the paralogous Hox-A1 protein from the Hoxb1 locus, either one tagged with IRES-tauGFP. Three independent biological replicates of each genotype were analyzed. Total RNA was isolated, amplified and hybridized to Affymetrix Mouse Genome 430 2.0 Arrays.

2008-06-13 | E-GEOD-5124 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data