Dataset Information

Proteomic analysis of six different tissues from the Atlantic bottlenose dolphin (Tursiops truncatus)

ABSTRACT: Proteomic analysis of six tissues (liver, kidney, blubber, brain, muscle, skin) provided experimental confirmation of 10,402 proteins from 4,711 protein groups, almost 1/3 of the possible predicted proteins in the Atlantic bottlenose dolphin (Tursiops truncatus) NCBI annotation (release 101), which is based on the recently completed NIST Tur_tru v1 genome assembly.

INSTRUMENT(S):

ORGANISM(S): Tursiops Truncatus (atlantic Bottle-nosed Dolphin) (delphinus Truncatus)

TISSUE(S): Brain, Liver, Muscle, Skin, Adipose Tissue, Kidney

SUBMITTER: Benjamin Neely

LAB HEAD: Benjamin Adam Neely

PROVIDER: PXD008808 | Pride | 2018-02-09

REPOSITORIES: Pride

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Proteomics as a Metrological Tool to Evaluate Genome Annotation Accuracy Following De Novo Genome Assembly: A Case Study Using the Atlantic Bottlenose Dolphin (<i>Tursiops truncatus</i>).

Neely Benjamin A BA Ellisor Debra L DL Davis W Clay WC

Genes 20230825 9

The last decade has witnessed dramatic improvements in whole-genome sequencing capabilities coupled to drastically decreased costs, leading to an inundation of high-quality de novo genomes. For this reason, the continued development of genome quality metrics is imperative. Using the 2016 Atlantic bottlenose dolphin NCBI RefSeq annotation and mass spectrometry-based proteomic analysis of six tissues, we confirmed 10,402 proteins from 4711 protein groups, constituting nearly one-third of the possi ...[more]

PMID: 37761836

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			Action	DRS
	Blubber - F002136.pride.mztab.gz	Mztab
	Blubber-F002136.mzid.gz	Mzid
	Blubber_2.mgf	Mgf
	Blubber_2.pride.mgf.gz	Mgf
	Blubber_2.raw	Raw