Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Systematic Discovery of Deeply Conserved Plant Protein Complexes, Wheat Germ.

ABSTRACT: The associated files are mass spec data from Size exclusion or Ion exchange chromatography fractions of soluble native wheat germ extract (Triticum aestivum).

INSTRUMENT(S):

ORGANISM(S): Triticum Aestivum (wheat)

TISSUE(S): Germ

SUBMITTER: Ophelia Papoulas

LAB HEAD: Edward M. Marcotte

PROVIDER: PXD013300 | Pride | 2019-10-28

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	wgIEX_05_1a_10242015..comet.pep.xml	Pepxml
	wgIEX_05_1a_10242015.MSGF+.pride.mztab.gz	Mztab
	wgIEX_05_1a_10242015.MSGF.mzid.gz	Mzid
	wgIEX_05_1a_10242015.mzXML	Mzxml
	wgIEX_05_1a_10242015.raw	Raw

Items per page:

1 - 5 of 990

Similar Datasets

Systematic Discovery of Deeply Conserved Plant Protein Complexes, Broccoli Nuclei

Project description:The associated files are mass spec data from individual fractions of ion exchange or size exclusion fractionations of native nuclear extract made from broccoli florets (Brassica oleracea var. italica). Ion exchange chromatography was on a concatenated WAX-WAX-CAT column series.

2019-10-28 | PXD013322 | Pride

Systematic Discovery of Deeply conse4rved Plant Protein Complexes, soy

Project description:The associated files are mass spec data from 2 Size exclusion chromatography experiments. The material was a native extract prepared from the green leafy tissue of approximately two-week-old soy sprouts. For size calibration the extract for the second fractionation was spiked with three size markers (Sigma-Aldrich MWGF1000) Thyroglobulin, beta-amylase, and BSA.

2019-10-28 | PXD013198 | Pride

Systematic Discovery of Plant Protein Complexes, fern

Project description:The associated files are mass spec data from Size exlusion and Triple-phase ion exchange chromatographic separations of native fern (Ceratopteris richardii) frond extract. The ion exchange separation used a concatenated series of 3 columns (WAX, WAX, CAT).

2019-10-28 | PXD013320 | Pride

Systematic Discovery of Deeply Conserved Plant Protein Complexes, Chlamydomonas

Project description:The associated files are mass spec data from three fractionation experiments. Two separations (size exclusion and ion exchange chromatography) were done on whole organism native extract from Chlamydomonas reinhardtii strain UTEX90, and one separations (size exclusion) was done on a separate native extract in an attempt to get nuclear extract from a cell-wall-less strain of Chlamydomonas reinhardtii (UTEX 2337). The extract was not particularly enriched for nuclear proteins but was useful in and of itself. Full methods will be published and summaries are below.

2019-10-28 | PXD013369 | Pride

Systematic Discovery of Deeply Conserved Plant Protein Complexes, rice

Project description:The associated files are mass spec data from individual fractions of mixed-bed ion exchange or size exclusion fractionations of native extract made from rice leaves (Oryza sativa, Kitaake cultivar).

2019-10-28 | PXD013213 | Pride

Identification of the L-A helper virus from native yeast cell extract

Project description:Identification of higher-order viral states of the L-A helper virus and polysomal assemblies in yeast native cell extract.

2024-05-12 | PXD034431 | Pride

Systematic Discovery of Deeply Conserved Plant Protein Complexes, Arabidopsis sprouts

Project description:The associated files are mass spec data from Chromatography fractions from 2 distinct separations of the same Arabidopsis thaliana sprout native extract. The extract was separated by size exclusion or by ion exchange using a concatenated series of 3 columns (WAX,WAX,CAT).

2019-10-28 | PXD013321 | Pride

Systematic Discovery of Deeply Conserved Plant Protein Complexes, DSSO-crosslinked soy (Glycine max)

Project description:The associated files are mass spec data from size exclusion chromatography fractions that were subsequently crosslinked with DSSO. The starting material was a native extract prepared from soy sprouts (Glycine max). The mass spectrometry used a data-dependent MS2-MS3 method to identify crosslinks.

2019-10-28 | PXD013704 | Pride

A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating - RNA DIF-FRAC Xenopus laevis Animal Cap explants Replicate 2

Project description:The associated files are mass spec data from size exclusion chromatographic separations of Xenopus laevis animal cap explants with and without RNAse A treatment.

2020-03-10 | PXD017650 | Pride

A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating - RNA DIF-FRAC Xenopus laevis Animal Cap explants Replicate 1

Project description:The associated files are mass spec data from size exclusion chromatographic separations of Xenopus laevis animal cap explants with and without RNAse A treatment.

2020-03-10 | PXD017659 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data