Proteomics

Dataset Information

0

Chr18 Consortium MS-data for missing proteins mining

ABSTRACT: Despite direct or indirect efforts of proteomic community, the fraction of blind spots on the protein map is still significant. Almost 10% (?) of human master protein has no experimental validation up to now. Apparently, proteomics has reached the stage where all easy scores are achieved (?), and every next identification requires more intension and curiosity in expansion of unusual types of biomaterial and/or conditions. In this article we discuss the current state of missing proteins search conducted by eclectic Russian Consortium in frame of C-HPP. We accumulated various data, obtained by Russian Proteomic Consortium.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Adipocyte, Brain, Cardiomyocyte Cell Line, Placenta, Blood Plasma, Caco-2 Cell, Hepg2 Cell, Cell Culture, Cervicovaginal Fluid, Hela Cell

DISEASE(S): Cardiovascular System Disease,Glioblastoma

SUBMITTER: Ekaterina Ilgisonis  

LAB HEAD: Elena Alexandrovna Ponomarenko

PROVIDER: PXD014300 | Pride | 2020-06-03

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
12_1.mgf Mgf
12_1.msgf.mzid.gz Mzid
12_1.msgf.pride.mztab.gz Mztab
12_1.pride.mgf.gz Mgf
12_1.raw Raw
Items per page:
1 - 5 of 222
altmetric image

Publications

Is It Possible to Find Needles in a Haystack? Meta-Analysis of 1000+ MS/MS Files Provided by the Russian Proteomic Consortium for Mining Missing Proteins.

Poverennaya Ekaterina E   Kiseleva Olga O   Ilgisonis Ekaterina E   Novikova Svetlana S   Kopylov Arthur A   Ivanov Yuri Y   Kononikhin Alexei A   Gorshkov Mikhail M   Kushlinskii Nikolay N   Archakov Alexander A   Ponomarenko Elena E  

Proteomes 20200523 2

Despite direct or indirect efforts of the proteomic community, the fraction of blind spots on the protein map is still significant. Almost 11% of human genes encode missing proteins; the existence of which proteins is still in doubt. Apparently, proteomics has reached a stage when more attention and curiosity need to be exerted in the identification of every novel protein in order to expand the unusual types of biomaterials and/or conditions. It seems that we have exhausted the current conventio  ...[more]

Similar Datasets

Proteomics Chr18 Consortium MS-data for missing proteins mining
2020-11-11 | MSV000086439 | MassIVE
Proteomics Pratylenchus penetrans PME - Identification and characterization of the first pectin methylesterase gene discovered in the root lesion nematode Pratylenchus penetrans
2019-02-28 | PXD012419 | Pride
Proteomics Proteomic analysis of the 15k extracellular vesicles from Opisthorchis viverrini
2024-09-20 | PXD020356 | Pride
Proteomics Proteomic analysis of the 120k extracellular vesicles from Opisthorchis viverrini
2022-03-15 | PXD020345 | Pride
Proteomics Shotgun mass-spectrometry of HL-60 cell proteins for spectrum library development
2017-11-09 | PXD006421 | Pride
Proteomics Subcellular fractionation in Ramos B-cells
2022-02-14 | PXD003939 | Pride
Methylation profiling Whole genome bisulfite sequencing data of Russian wheat aphid biotypes US-RWA1 (co-fed), US-RWA2 (co-fed) and US-RWA2 (isolated)
2022-06-30 | GSE185975 | GEO
Proteomics Design and development of nanoproteomics strategies for biomarker identification in cerebrospinal fluid of leptomeningeal disease, using as model lymphoma non-Hodgkin B.
2022-02-17 | PXD026016 | Pride
Methylation profiling Serum Dioxin and DNA Methylation in the Sperm of Operation Ranch Hand Veterans Exposed to Agent Orange
2019-10-24 | GSE139307 | GEO
Proteomics Proteomic profiling of human mesenchymal stem cells derived from umbilical cord or adipose tissue
2018-07-11 | PXD009893 | Pride