Dataset Information

Proteome decomplexation of Trimeresurus erythrurus from India

ABSTRACT: Proteome decomplexation of T. erythrurus venom was performed using a two-step proteomics approach. Crude venom was firstly subjected to reverse phase chromatography and the resulting peaks were subsequently processed for in-solution trypsin digestion and LC-MS/MS analysis. Protein identification was done using Proteome discoverer 2.2 with Sequest program.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Trimeresurus Erythrurus

TISSUE(S): Venom

SUBMITTER: Susmita Thakur

LAB HEAD: Robin Doley

PROVIDER: PXD038311 | Pride | 2023-03-11

REPOSITORIES: Pride

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Proteome Decomplexation of Trimeresurus erythrurus Venom from Mizoram, India.

Thakur Susmita S Blotra Avni A Vasudevan Karthikeyan K Malhotra Anita A Lalremsanga Hmar Tlawmte HT Santra Vishal V Doley Robin R

Journal of proteome research 20221214 1

Green pit vipers are the largest group of venomous vipers in tropical and subtropical Asia, which are responsible for most of the bite cases across this region. Among the green pit vipers of the Indian subcontinent, Trimeresurus erythrurus is the most prevalent; however, limited knowledge is available about its venomics. Proteome decomplexation of T. erythrurus venom using mass spectrometry revealed a blend of 53 different proteins/peptides belonging to 10 snake venom protein famil ...[more]

PMID: 36516484

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Project description:Background The generalist dipteran pupal parasitoid Nasonia vitripennis injects 79 venom peptides into the host before egg laying. This venom induces several important changes in the host, including developmental arrest, immunosuppression, and alterations to normal metabolism. It is hoped that diverse and potent bioactivities of N. vitripennis venom provide an opportunity for the design of novel acting drugs. However, currently very little is known about the individual functions of N. vitripennis venom peptides and less than half can be bioinformatically annotated. The paucity of annotation information complicates the design of studies that seek to better understand the potential mechanisms underlying the envenomation response. Although the RNA interference system of N. vitripennis provides an opportunity to functionally characterise venom encoding genes, with 79 candidates this represents a daunting task. For this reason we were interested in determining the expression levels of venom encoding genes in the venom gland, such that this information could be used to rank candidate venoms. To do this we carried out deep sequencing of the transcriptome of the venom gland and neighbouring ovary tissue and used RNA-seq to measure expression from the 79 venom encoding genes. The generation of a specific venom gland transcriptome dataset also provides further opportunities to investigate novel features of this highly specialised organ. Results High throughput sequencing and RNA-seq revealed that the highest expressed venom encoding gene in the venom gland was a serine protease called Nasvi2EG007167, which has previously been implicated in the apoptotic activity of N. vitripennis venom. As expected the RNA-seq confirmed that the N. vitripennis venom encoding genes are almost exclusively expressed in the venom gland relative to the neighbouring ovary tissue. Novel peptides appear to perform key roles in N. vitripennis venom function as only four of the highest 15 expressed venom encoding genes are bioinformatically annotationed. The high throughput sequencing data also provided evidence for the existence of an additional 471 novel genes in the Nasonia genome that are expressed in the venom gland and ovary. Finally, metagenomic analysis of venom gland transcripts identified viral transcripts that may play an important part in the N. vitripennis venom function. Conclusions The expression level information provided here for the 79 venom encoding genes provides an unbiased dataset that can be used by the N. vitripennis community to identify high value candidates for further functional characterisation. These candidates represent bioactive peptides that have value in drug development pipelines.

Dataset Information

Proteome decomplexation of Trimeresurus erythrurus from India

Publications

Proteome Decomplexation of <i>Trimeresurus erythrurus</i> Venom from Mizoram, India.

Similar Datasets

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