Proteomics

Dataset Information

0

High Field Asymmetric Waveform Ion Mobility Spectrometry- Mass Spectrometry to Enhance Cardiac Muscle Proteome Coverage


ABSTRACT: Heart tissue sample preparation for mass spectrometry (MS) analysis that includes pre-fractionation reduces the cellular protein dynamic range and increases the relative abundance of non-sarcomeric proteins. We previously described “IN-Sequence” (IN-Seq) where heart tissue lysate is sequentially partitioned into three subcellular fractions to increase the proteome coverage than a single direct tissue analysis by mass spectrometry. Here, we report an adaptation of the high-field asymmetric ion mobility spectrometry (FAIMS) coupled to mass spectrometry, and the establishment of a simple one step sample preparation coupled with gas-phase fractionation. FAIMS approach substantially reduces manual sample handling, significantly shortens MS instrument processing time, and produces unique protein identification and quantification approximating the commonly used IN-Seq method in for less time requirement.

INSTRUMENT(S): Orbitrap Fusion Lumos

ORGANISM(S): Mus Musculus (mouse)

TISSUE(S): Heart

SUBMITTER: Aleksandr Stotland  

LAB HEAD: Jennifer Van Eyk

PROVIDER: PXD039174 | Pride | 2023-07-20

REPOSITORIES: Pride

altmetric image

Publications

High-Field Asymmetric Waveform Ion Mobility Spectrometry: Practical Alternative for Cardiac Proteome Sample Processing.

Ai Lizhuo L   Binek Aleksandra A   Kreimer Simion S   Ayres Matthew M   Stotland Aleksandr A   Van Eyk Jennifer E JE  

Journal of proteome research 20230411 6


Heart tissue sample preparation for mass spectrometry (MS) analysis that includes prefractionation reduces the cellular protein dynamic range and increases the relative abundance of nonsarcomeric proteins. We previously described "IN-Sequence" (IN-Seq) where heart tissue lysate is sequentially partitioned into three subcellular fractions to increase the proteome coverage more than a single direct tissue analysis by mass spectrometry. Here, we report an adaptation of the high-field asymmetric ion  ...[more]

Similar Datasets

2014-05-16 | E-GEOD-57693 | biostudies-arrayexpress
2023-01-06 | PXD033846 | Pride
2021-01-04 | PXD016626 | Pride
2014-07-17 | E-GEOD-59510 | biostudies-arrayexpress
2012-06-30 | E-GEOD-35839 | biostudies-arrayexpress
2008-04-04 | E-GEOD-10919 | biostudies-arrayexpress
2012-03-01 | E-GEOD-33423 | biostudies-arrayexpress
2015-01-05 | E-GEOD-62672 | biostudies-arrayexpress
2015-08-28 | E-GEOD-72469 | biostudies-arrayexpress
2014-07-22 | E-GEOD-59552 | biostudies-arrayexpress