Proteomics

Dataset Information

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Short isoforms of E3 ligase RNF220 are broadly expressed and impact differentiation.


ABSTRACT: The human RNF220 coding gene is located at Chr1: p34.1 (NCBI Gene ID: 55182). To date, four isoforms of the RNF220 protein have been described. Prior functional studies have investigated 70 kDa proteins, primarily isoform 1 but potentially isoform 3. Here, we show that the shorter isoforms of RNF220 that lack much of the N-terminus, the 353 AA isoform 2 and 308 AA isoform 4, are broadly expressed at high levels. While targets of RNF220 ubiquitination have been identified and their physiological roles elucidated [3,11], these studies have been limited to substrates of isoform 1. We hypothesized that the ubiquitous, highly expressed short isoforms may play a more fundamental role in most tissues. The shorter isoforms were found to perform distinct functions including in myoblast differentiation. These findings strongly argue for the investigation of these short isoforms in future studies on RNF220 function.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Donald Wolfgeher  

LAB HEAD: Dr. Woo-Young Kim

PROVIDER: PXD051716 | Pride | 2026-07-12

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
230330_SC1_Gels.pptx Other
230412_Human_Iso.fasta Fasta
230413_SC1_1FDR.sps Other
230511_SC1_1FDR_Final.xlsx Xlsx
ce2_2023Apr10_06_uc23406_sc1_1a.raw Raw
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Publications

N-Terminal deleted isoforms of E3 ligase RNF220 are ubiquitously expressed and required for mouse muscle differentiation.

Choi SeokGyeong S   Ha Sojung S   Wolfgeher Donald J DJ   Kim Jee Won JW   Go Young-Hyun YH   Cha Hyuk-Jin HJ   Bae Gyu-Un GU   Kron Stephen J SJ   Kim Woo-Young WY  

Molecules and cells 20250701 9


Four isoform peptides of the novel E3 ligase ring finger protein 220 (RNF220) have been identified in humans. However, all of the previous studies have predominantly focused on isoform 1 (the full-length form), which consists of 566 amino acids. Here, we show that a shorter isoform, which is 308 amino acids lacking most of the N-terminus (human isoform 4; mouse isoform 3; ΔN-RNF220), is the predominant and ubiquitously expressed variant that warrants functional investigation. Both isoform 1 and  ...[more]

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