Dataset Information

Metabolic exploration of L-lactate- and D-lactate-consuming microbial communities.

ABSTRACT: Metabolic exploration of L-lactate- and D-lactate-consuming microbial communities.

INSTRUMENT(S):

ORGANISM(S): Propionibacteriaceae

SUBMITTER: Martin Pabst

LAB HEAD: Martin Pabst

PROVIDER: PXD068334 | Pride | 2026-01-27

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	MA_all_genes_20250225200520_GPM_Crap_20180302154349.fasta	Fasta
	MP_DH_MA02032025_R1_180min_DDA01.mzXML	Mzxml
	MP_DH_MA02032025_R1_180min_DDA01.raw	Raw
	MP_DH_MA02032025_R1_180min_DDA02.mzXML	Mzxml
	MP_DH_MA02032025_R1_180min_DDA02.raw	Raw

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Project description:The organic acids lactate and diacetate are commonly used in combination in ready-to-eat foods because they show synergistic, i.e. greater than additive, ability to inhibit the growth of Listeria monocytogenes. Full genome microarrays were used to investigate the synergistic transcriptomic response of two L. monocytogenes strains, h7858 (serotype 4b) and f6854 (serotype 1/2a), to organic acid, under conditions controlling for osmotic and cold stress. Strains were exposed to BHI broth at 7°C with 4.65% water phase (w.p.) NaCl at pH 6.1 treated with 2% w.p. potassium lactate, 0.14% w.p. sodium diacetate, the combination of both at the same levels, or no inhibitors as control. RNA was extracted 8h after exposure, during lag phase, to capture gene expression changes during adaptation to the organic acid stress. Treatment with organic acids induced massive global transcriptional changes, with 1041 and 640 genes differentially expressed in h7858 and f6854. Major effects of treatment with lactate and diacetate are (i) a total of 474 and 209 genes, for h7858 and f6854, that showed synergistic expression differences, (ii) differential expression of membrane ion transport genes including those encoding ABC transporters of metals and decreased multi-drug transporter expression many ABC, PTS, and drug transporter systems, including increased PTS sugar transport and decreased multi-drug transporter expression, and (iii) altered metabolism including induction of a nutrient limiting stress response, reduction of menaquinone biosynthesis, and a shift from fermentative production of lactate and acetate and lactate to energetically less favorable, neutral acetoin. These data suggest that additional synergies in L. monocytogenes growth inhibition could be achieved by treatments that interfere with cellular energy generation processes. The dye-swapped, single loop design hybridizes a single biological replicate of both 2% water phase lactate (PL) and 0.14% water phase acetate (SDA) treatments to both the control (CTRL) and combination (PLSDA) treatments (4 hybridizations), using opposite dye labels for each sample, and a second biological replicate is hybridized with dye assignments swapped (4 more hybridizations) to balance labeling effects. The design was repeated twice comprising 16 hybridizations over 4 biological replicates for each strain, and 32 total hybridizations over both h7858 and f6854.

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Metabolic exploration of L-lactate- and D-lactate-consuming microbial communities.

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