Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

WGS Pseudomonas strains clinical and enviromental

ABSTRACT: Whole-genome sequencing of Pseudomonas strains both clinical and environmental

PROVIDER: PRJEB28535 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Clinical strains

Project description:Clinical strains from Croatia and Bosnia

| PRJEB32677 | ENA

Pseudomonas aeruginosa strain:clinical isolates

Project description:Transcriptome study of Pseudomonas aeruginosa clinical strains

| PRJNA236589 | ENA

Exoproteome of clinical isolates of Pseudomonas aeruginosa with limited cheating ability

Project description:Pseudomonas aeruginosa is an opportunistic bacterial pathogen that possesses a plethora of virulence factors, including the public goods siderophores and exoproteases. Mutants unable to produce either exoprotease or siderophores are selected in competition with producers; hence, these two virulence factors are prone to exploitation by social cheaters. However, so far most of the studies of exoprotease exploitation by social cheaters had been done in the reference strains PAO1 and PA14 and the information available of these behaviors in clinical or environmental isolates is limited to a few studies. In this work, we studied the exoproteases secreted by two clinical isolates from cystic fibrosis patients belonging to the epidemic clone ST274-CC274. We found that the exoprotease exploitation in these strains is mild and not a result of the selection of lasR mutants during continuous growth in casein as sole carbon source, in contrast with the paradigm in the reference strains.

2025-11-10 | PXD061353 | Pride

Genomic DNA hybridization of Pseudomonas aeruginosa strains PAO1 and PA14

Project description:Genomic DNA from Pseudomonas aeruginosa strains PAO1 and PA14

2015-11-15 | GSE67038 | GEO

WGS Pseudomonas strains isolated from water"

Project description:Whole-genome sequencing of Pseudomonas strains isolated from water

| PRJEB28536 | ENA

RNAseq data from wild type and evolved Pseudomonas fluorescens SBW25 strains

Project description:We report mRNA expression data from Pseudomonas fluorescens SBW25 wild type and two evolved strains (Beaumont et al., 2009). The evolution of one of these strains saw the emergence of colony switching; 1B4 switches rapidly between two different colony phenotypes. These two phenotypes were found to be genetically identical. Thus, in order to gain insight into epigenetic mechanisms of switching, we were interested in identifiying gene expression differences between ancestors and the 1B4 colony phenotypes.

2015-02-05 | GSE48900 | GEO

Pseudomonas aeruginosa clinical isolates

Project description:35 P. aeruginosa clinical strains were cultivated under standard conditions, characterized in terms of virulence and biofilm phenotype, and their metabolomes were investigated by untargeted liquid chromatography-mass spectrometry.

2022-07-12 | MSV000089869 | MassIVE

Transcription profiling of Pseudomonas aeruginosa roxSR and anr mutant strains under aerobic conditions

Project description:To assess the role of two redox-sensitive transcriptional regulators, RoxSR and ANR, in Pseudomonas aeruginosa under aerobic conditions, microarray analysis was performed. Transcriptome profiles of roxSR mutant and anr mutant aerobically grown in LB medium were determined by Affymetrix GeneChip at both the exponential phase and early stationary phase and compared to that of the wild type strain. Experiment Overall Design: Pseudomonas aeruginosa wild type (PAO1ut), roxSR mutant (ROX1), and anr mutant (PAO6261) strains were cultivated aerobically in LB in Erlenmeyer flasks, and total RNAs were extracted at both the exponential phase (OD600 = 0.3) and early stationary phase (OD600 = 1.4). The experiment was performed in duplicate independent cultures.

2009-08-09 | E-GEOD-17296 | biostudies-arrayexpress

Transcription profiling by array of Pseudomonas aeruginosa wild type, BphP and BphO strains.

Project description:The transcriptome of two different Pseudomonas aeruginosa mutant strains were compared to the Pseudomonas aeruginosa wild type strain in the stationary growth phase

2010-04-24 | E-MEXP-2606 | biostudies-arrayexpress

Characterization of DkaiC mutants of Pseudomonas putida KT2440/2 and Pseudomonas protegens CHA0

Project description:KaiC is the central cog of the circadian clock in Cyanobacteria. Close homologs of this protein are widespread among bacteria not known to have a circadian physiology. The function, interaction network, and mechanism of action of these KaiC homologs are still largely unknown. Here, we focus on KaiC homologs found in environmental Pseudomonas species. We characterize experimentally the only KaiC homolog present in Pseudomonas putida KT2440 and Pseudomonas protegens CHA0. Through phenotypic assays and transcriptomics, we show that KaiC is involved in osmotic and oxidative stress resistance in P. putida and in biofilm production in both P. putida and P. protegens.

2023-01-04 | GSE221044 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data