Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Corona Danica

ABSTRACT: Corona virus sequencing in Denmark

PROVIDER: PRJEB37966 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4080480_1.fastq.gz	Fastqsanger.gz
	ERR4080490_1.fastq.gz	Fastqsanger.gz
	ERR4080500_1.fastq.gz	Fastqsanger.gz
	ERR4080510_1.fastq.gz	Fastqsanger.gz
	ERR4080520_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 752

Similar Datasets

Transcriptomic analysis of corona radiata cells after hormonal stimulation (PMSG/hCG)

Project description:Cumulus-oocyte complexes were collected post-PMSG/hCG induction at J4 for 3 genotypes : wild-type (WT), DKO for LXRalpha and LXRbeta (DKO) and DKO for LXRalpha and LXRbeta rescued for LXRbeta in granulosa cells (TG-AMHb). Corona radiata cells were isolated from oocytes using hyaluronidase treatment and collected for transcriptomic analysis.

2024-01-01 | GSE222134 | GEO

Transcriptomic profiling of human corona virus (HCoV)-229E -infected human cells

Project description:Transcriptomic profiling of human corona virus (HCoV)-229E -infected human cells

| PRJNA656274 | ENA

Viral corona - The project introduces teh concept of a viral corona similarly to the nanoparticle protein corona

Project description:The project introduces teh concept of a viral corona similarly to the nanoparticle protein corona

2019-04-11 | PXD009521 | Pride

Protein corona formed on lipid nanoparticles compromises delivery efficiency of mRNA cargo

Project description:Proteomics to characterize the protein corona for lipid nanoparticles

2025-06-17 | MSV000098245 | MassIVE

Protein Corona of 60nm Silver Nanoparticles

Project description:We studied the composition of the protein corona formed on 60 nm silver nanoparticles with citrate coating interacted with the human blood plasma under various pH and temperature conditions. The protein corona was analyzed using LC-MS and label-free quantitation.

2019-01-23 | PXD007648 | Pride

Plasma protein corona on superparamagnetic iron oxide nanoparticles (SPIONs)

Project description:We determined the composition of the plasma protein corona on silica-coated versus dextran-coated iron oxide nanoparticles using mass spectrometry-based proteomics approaches. Gene ontology (GO) enrichment analysis and Ingenuity Pathway Analysis (IPA) revealed distinct protein corona compositions for the two different SPIONs. Relaxivity of silica-coated SPIONs was modulated by the presence of a protein corona. Moreover, the viability of primary human monocyte-derived macrophages was influenced by the protein corona on silica-coated, but not dextran-coated SPIONs, and the protein corona promoted cellular uptake of silica-coated SPIONs, but did not affect internalization of dextran-coated SPIONs.

2015-10-12 | PXD000766 | Pride

Transcriptomic analysis of corona radiata cells after hormonal stimulation (PMSG/hCG)

Project description:Transcriptomic analysis of corona radiata cells after hormonal stimulation (PMSG/hCG)

| PRJNA918358 | ENA

Nanoparticle protein corona LC-MS/MS

Project description:Engineered nanoparticles for biomedical applications require increased effectiveness in targeting specific cells while preserving non-target cells’ safety. Native nanoparticles entering a protein-rich liquid media quickly form a macromolecular structure called protein corona. This protein structure defines the physical interaction between nanoparticles and target cells. We describe SUSTU (surface proteomics for nanoparticle safety, targeting and uptake) a proteomics-based method to analyze the surface of a nanoparticle protein corona. This method provides qualitative and quantitative analysis from the protein corona surface. Those exposed proteins compose the first line of interaction between this macromolecular structure and the cell surface of a target cell. With SUSTU, the spatial and temporal dynamics of the protein corona surface can be studied. Data from SUSTU would ascertain the nanoparticle functionalized groups exposed at destiny; circumventing preliminary in vitro experiments. Therefore this method evaluates nanoparticle targeting and uptake capability and could be integrated into a rapid prototyping strategy which is a major challenge in nanomaterial science.

2017-02-28 | PXD004636 | Pride

Lack of Fzd6 in Ciliated Cells Suppresses Ferroptotic Alveolar Cell Death induced by LPS and Corona Virus

Project description:Lack of Fzd6 in Ciliated Cells Suppresses Ferroptotic Alveolar Cell Death induced by LPS and Corona Virus

| PRJNA923597 | ENA

New method to investigate protein orientation in corona of nanomaterials

Project description:The composition and structure of protein corona represents a crucial factor that controls the biological properties and fate of nanomaterials. While the composition of the corona can relatively easily be investigated by conventional bottom-up proteomics, assessing the spatial orientation of a protein in the corona (i.e assessing which epitopes are exposed on the outer surface) is still a challenging and time-consuming task. In this paper, we show that labeling the corona proteins with isobaric tags in their native conditions, and the subsequent analysis of MS/MS spectra of tryptic peptides, allows an easy and high-troughput assessment of the inner/outer orientation of the corresponding proteins in the original corona.

2021-09-09 | PXD019524 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data