Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of wild type and mutant Drosophila flies with a deletion of the gene CG16717 (dMPPED)

ABSTRACT: RNA-seq of wild type and mutant Drosophila flies with a deletion of the gene CG16717 (dMPPED)

PROVIDER: PRJEB38321 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4147160_1.fastq.gz	Fastqsanger.gz
	ERR4147160_2.fastq.gz	Fastqsanger.gz
	ERR4147155_1.fastq.gz	Fastqsanger.gz
	ERR4147155_2.fastq.gz	Fastqsanger.gz
	ERR4147156_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

RNA-seq of wild type and mutant Drosophila flies with a deletion of the gene CG16717 (dMPPED)

Project description:Flies deficient in the gene CG16716 were created and showed a reduced life span when compared to wild type w1118 flies. Flies were harvested on day 35 (both wild type and mutant flies), RNA prepared and subjected to RNA-seq.

2021-03-31 | E-MTAB-9081 | biostudies-arrayexpress

Expression data for dSTING mutant vs. wild type flies

Project description:STING is a protein that plays important role in innate immune response. However, it also has functions not related to immunity. We studied role of STING in fruit fly Drosophila melanogaster. We used microarray to detect gene expression changes in dSTING knockout fruit flies. We studied role of STING in fruit fly Drosophila melanogaster. To detect gene expression changes in dSTING-knockout flies microarray assay was used.

2021-02-22 | GSE167164 | GEO

Wild-type versus Pumilio mutant flies

Project description:Total RNA was isolated with TRIZOL reagent from wild-type flies (yellow white, yw) and Pumilio mutant flies (pum13; Barker DD. et al. (1992) Genes Dev 6, 2312-26). 12 microgram of total RNA was used for cDNA synthesis using a 1:1 mixture of oligo(dT) and random nonamer primers and in the presence of amino-allyl dUTP. Set of arrays that are part of repeated experiments Keywords: Biological Replicate

2006-02-28 | GSE3580 | GEO

Expression data for dSTING mutant vs. wild type flies

Project description:Expression data for dSTING mutant vs. wild type flies

| PRJNA703505 | ENA

RNA-Seq of head tissue from Drosophila melanogaster Wild Type and AdarEA mutant

Project description:We profiled gene expression in flies with and without A-to-I RNA editing (AdarEA mutant Drosophila melanogaster with a Canton-S background).

2017-01-04 | GSE86054 | GEO

RNA-Seq of head tissue from Drosophila melanogaster Wild Type and Adar5G1 mutant

Project description:We profiled gene expression in flies with and without A-to-I RNA editing (AdarEA mutant Drosophila melanogaster with a Canton-S background).

2019-03-15 | GSE128332 | GEO

Wild-type versus Pumilio mutant flies

2010-07-01 | E-GEOD-3580 | biostudies-arrayexpress

Cytospora chrysosperma wild type and CcPmk1 deletion mutant LC-MS/MS

Project description:We compare the phosphoproteome analysis of Cytospora chrysosperma wild type and CcPmk1 deletion mutant, which can help us to identify the putative regulation pattern of CcPmk1 through protein phosphorylation.

2022-10-14 | PXD032206 | Pride

Transcriptome of wild-type and G9a mutant upon viral challenge

Project description:The aim of the study was to generate transcriptome of wild-type and G9a mutant adult flies (females) 24h post-infection with Drosophila C Virus (DCV).

2015-01-24 | GSE56013 | GEO

RNA-Seq of head tissue from Drosophila melanogaster Wild Type and Adar5G1dAdar-/- mutant

Project description:Purpose: Validation of Drosophila A-to-I editing sites Methods: We collected heads of 5 day old male dAdar-/- mutant (y, Adar5G1, w)26 and wild type (w1118) flies. Poly(A)+ RNA was used to prepare RNA-seq libraries which were subsequently sequenced single-end by an Illumina GAII Results:We builded a framework to identify RNA editing events using RNA-seq data alone in Drosophila. To validate whether the identified A-to-G sites were bona fide A-to-I editing events, we performed RNA-seq for the D.melanogaster wild-type strain (w1118) and for the Adar5G1 null mutant that eliminates RNA editing. We found that our method achieved high accuracy; 98.2% of all A-to-G sites showed only adenosine in the Adar5G1 sample Conclusions: We anticipate that our method will be very effective in the future to identify RNA editing events in different species. mRNA profiles of heads of 5 day old male dAdar-/- mutant (y, Adar5G1, w)26 and wild type (w1118) flies

2012-12-20 | E-GEOD-42815 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data