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Metatranscriptomic analyses of a bacterioplankton bloom

ABSTRACT: Illumina and 454-based metatranscriptomic analyses of a diatom-induced bacterioplankton bloom in the North Sea

PROVIDER: PRJEB4843 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR367970.fastq.gz	Fastqsanger.gz
	ERR367971.fastq.gz	Fastqsanger.gz
	ERR367972.fastq.gz	Fastqsanger.gz
	ERR367973.fastq.gz	Fastqsanger.gz
	ERR367974.fastq.gz	Fastqsanger.gz

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Project description:Phytoplankton blooms exhibit a severe impact on bacterioplankton communities as they change nutrient availabilities and other environmental factors. In the current study, the response of a bacterioplankton community to a Phaeocystis globosa spring bloom was investigated in the southern North Sea. For this purpose, water samples were taken inside and reference samples outside of an algal spring bloom. Structural changes of the bacterioplankton community were assessed by amplicon-based analysis of 16S rRNA genes and transcripts generated from environmental DNA and RNA, respectively. Several marine groups responded to bloom presence. The abundance of the Roseobacter RCA cluster and the SAR92 clade significantly increased in bloom presence in the total and active fraction of the bacterial community. Functional changes were investigated by direct sequencing of environmental DNA and mRNA. The corresponding datasets comprised more than 500 million sequences across all samples. Metatranscriptomic data sets were mapped on representative genomes of abundant marine groups present in the samples and on assembled metagenomic and metatranscriptomic datasets. Differences in gene expression profiles between non-bloom and bloom samples were recorded. The genome-wide gene expression level of Planktomarina temperata, an abundant member of the Roseobacter RCA cluster, was higher inside the bloom. Genes that were differently expressed included transposases, which showed increased expression levels inside the bloom. This might contribute to the adaptation of this organism toward environmental stresses through genome reorganization. In addition, several genes affiliated to the SAR92 clade were significantly upregulated inside the bloom including genes encoding for proteins involved in isoleucine and leucine incorporation. Obtained results provide novel insights into compositional and functional variations of marine bacterioplankton communities as response to a phytoplankton bloom.

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Metatranscriptomic analyses of a bacterioplankton bloom

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