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KmMyxGlut

ABSTRACT: Myxine glutinosa (Atlantic hagfish)

PROVIDER: PRJEB69502 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
		Other
	ERR12303933.fastq.gz	Fastqsanger.gz
	ERR12303934.fastq.gz	Fastqsanger.gz
	ERR12303935.fastq.gz	Fastqsanger.gz

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1 - 5 of 19

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kmMyxGlut1

Project description:Myxine glutinosa (Atlantic hagfish) genome assembly, kmMyxGlut1

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The hagfish genome and the evolution of vertebrates

Project description:As the only surviving lineages of jawless fishes, hagfishes and lampreys provide a critical window into early vertebrate evolution. Here, we investigate the complex history, timing, and functional role of genome-wide duplications in vertebrates in the light of a chromosome-scale genome of the brown hagfish Eptatretus atami. Using robust chromosome-scale (paralogon-based) phylogenetic methods, we confirm the monophyly of cyclostomes, document an auto-tetraploidization (1RV) that predated the origin of crown group vertebrates ~517 Mya, and establish the timing of subsequent independent duplications in the gnathostome and cyclostome lineages. Some 1RV gene duplications can be linked to key vertebrate innovations, suggesting that this early genomewide event contributed to the emergence of pan-vertebrate features such as neural crest. The hagfish karyotype is derived by numerous fusions relative to the ancestral cyclostome arrangement preserved by lampreys. These genomic changes were accompanied by the loss of genes essential for organ systems (eyes, osteoclast) that are absent in hagfish, accounting in part for the simplification of the hagfish body plan; other gene family expansions account for hagfishes’ capacity to produce slime. Finally, we characterise programmed DNA elimination in somatic cells of hagfish, identifying protein-coding and repetitive elements that are deleted during development. As in lampreys, the elimination of these genes provides a mechanism for resolving genetic conflict between soma and germline by repressing germline/pluripotency functions. Reconstruction of the early genomic history of vertebrates provides a framework for further exploration of vertebrate novelties.

2024-01-04 | GSE230176 | GEO

Transcription profiling of A. glutinosa roots growing with indirect contact with Frankia in nitrogen-free culture medium against A. glutinosa roots alone in nitrogen-free culture medium during 2 days

Project description:Experiment with 2 conditions: - Contactless : A. glutinosa alone in nitrogen-free culture medium during 2 days (reference condition). - Indirect : A. glutinosa in nitrogen-free culture medium containing the Frankia bacterium confined in a dialysis tube during 2 days.

2021-12-31 | E-MTAB-8936 | biostudies-arrayexpress

Transcription profiling of A. glutinosa roots growing with Frankia culture supernatant in nitrogen-free culture medium against A. glutinosa roots alone in nitrogen-free culture medium plus frankialess culture medium for 2 days

Project description:Experiment with 2 conditions: - BAP-PCM : A. glutinosa alone in nitrogen-free culture medium plus frankialess culture medium during 2 days (reference condition). - CN BAP-PCM : A. glutinosa in nitrogen-free culture medium with Frankia culture supernatant during 2 days.

2021-12-31 | E-MTAB-8937 | biostudies-arrayexpress

Evolution of Collagen IV chains. Dogfish Lens

Project description:Evolution of Collagen IV chains from ministeria to ctenophora to hagfish/dogfish.

2025-06-16 | PXD042111 | Pride

Comparative proteomic analysis of root tubers of Rehmannia glutinosa at different growth stages

Project description:In this study, roots of Rehmannia glutinosa were used as experimental material, and three tuber roots of Rehmannia glutinosa in extension stage (I), expansion stage (E) and mature stage (M) were selected as samples, The iTRAQ quantitative proteomic technology combined with two-dimensional liquid chromatography and tandem mass spectrometry (2D-LC-MSMS) technology was used to construct the root tuber proteome database of Rehmannia glutinosa, the genes related to the growth and development of Rehmannia glutinosa root tuber were found.

2022-02-17 | PXD025914 | Pride

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