Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

PiParTeta

ABSTRACT: Paramecium tetratobursaria, genomic and transcriptomic data

PROVIDER: PRJEB87013 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR14749214_1.fastq.gz	Fastqsanger.gz
	ERR14749214_2.fastq.gz	Fastqsanger.gz
	ERR14749981.fastq.gz	Fastqsanger.gz
	ERR14749982.fastq.gz	Fastqsanger.gz
	ERR14986733_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

piParNeph

Project description:Paramecium nephridiatum, genomic and transcriptomic data

| PRJEB65012 | ENA

piParDeut

Project description:Paramecium deuterobursaria, genomic and transcriptomic data

| PRJEB88233 | ENA

piParBurs

Project description:Paramecium bursaria, genomic and transcriptomic data

| PRJEB86543 | ENA

Paramecium bursaria

Project description:Paramecium bursaria sequence data

| PRJNA673334 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

Transcriptome analysis, Paramecium tetraurelia ICL (as a control) vs. Rdr3 silencing

Project description:Differential transcriptome of Paramecium tetraurelia strain 51 undergoing RNAi by feeding against ICL7a (as a control) and RDR3 for nine days.

2014-07-15 | GSE59390 | GEO

Paramecium subcellular spatial proteomics

Project description:To gain insight into how Paramecium cells reorganize their subcellular structure during endosymbiosis stage, we generated a comprehensive spatial proteomics map across aposymbiotic Paramecium and endosymbiotic Paramecium

2024-10-18 | PXD055842 | Pride

RNA-mediated nucleosome depletion is required for elimination of transposon-derived DNA

Project description:To study the role of chromatin remodeler during programmed genome reorganization in Paramecium tetraurelia. Paramecium ISWI1 was tagged with 3 FLAG and HA at its C-terminal. The recombinant plasmid was transformed into Paramecium and used for co-immunoprecipitation and Mass spectrometry studies to identify novel interacting partners of Paramecium ISWI1 protein that modulates the elimination of transposable elements.

2023-03-11 | PXD027206 | Pride

idSarRose

Project description:Sarcophaga rosellei, genomic and transcriptomic data

| PRJEB47784 | ENA