Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

XbXylDors

ABSTRACT: Xylophaga dorsalis, genomic and transcriptomic data.

PROVIDER: PRJEB87515 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR14767870_1.fastq.gz	Fastqsanger.gz
	ERR14767870_2.fastq.gz	Fastqsanger.gz
	ERR14767871_1.fastq.gz	Fastqsanger.gz
	ERR14767871_2.fastq.gz	Fastqsanger.gz
	ERR14767872_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 49

Similar Datasets

xbXylDors

Project description:Xylophaga dorsalis

| PRJEB87517 | ENA

xbXylDors1

Project description:Xylophaga dorsalis, genome assembly, xbXylDors1.

| PRJEB87516 | ENA

icLonDors

Project description:Longitarsus dorsalis, genomic and transcriptomic data

| PRJEB84110 | ENA

qqGluDors

Project description:Gluvia dorsalis, genomic and transcriptomic data.

| PRJEB76504 | ENA

E-GEOD-30573

Project description:Transcriptomic analysis of autistic brain reveals convergent molecular pathology [high-throughput sequence data]

2025-01-24 | E-GEOD-30573 | ExpressionAtlas

The widely conserved microRNA, miR-1-3p, is a male-determining factor in the oriental fruit fly, Bactrocera dorsalis

Project description:We constructed three small RNA libraries from embryos at 5, 6 and 7 post-oviposition (hpo) of Bactrocera dorsalis for deep sequencing. The data analysis revealed 147 known and 103 novel miRNAs from these libraries.

2019-07-04 | GSE117310 | GEO

Identification and characterization of sex-biased microRNAs in Bactrocera dorsalis (Hendel)

Project description:We constructed four small RNA libraries from whole body of females, males (except ovaries and testes) and ovaries, testes of B. dorsalis for deep sequencing. The data analysis revealed 314 known and 221 novel miRNAs from these libraries. 14 female-biased and 12 male-biased miRNAs that may be involved in sexual differentiation were found by comparing the miRNA expression profiles in the four libraries.

2017-02-14 | GSE80536 | GEO

Project description:Xylophaga in situ Eclusion Experiment

| PRJNA284517 | ENA

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data