Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Pumpkin genome diversity

PROVIDER: PRJNA1005018 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25753313.fastq.gz	Fastqsanger.gz
	SRR25753314.fastq.gz	Fastqsanger.gz
	SRR25753315.fastq.gz	Fastqsanger.gz
	SRR25753316.fastq.gz	Fastqsanger.gz
	SRR25753317.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Identification of PUMPKIN RNA targets using RIPSeq

Project description:Stroma extracts were isolated from 2-week-old WT plants and incubated with either PUMPKIN-specific antibodies or with the pre-immune serum. IgGs were captured with SiMAG-Protein G beads (Chemicell) and recovered RNA was used for generation of libraries with the ScriptSeq v2 RNA-seq Library Preparation Kit (Epicentre). Primary reads were aligned to the Arabidopsis chloroplast genome (accession number NC_000932.1) using CLC Genomics Workbench, the mean RPKM values of the replicates as well as the ratio of PUMPKIN vs Pre-immuneserum were calculated. Five prominent RNA targets (trnG-UCC, trnV-UAC, petB, petD and ndhA) were identified and validated via Slot Blot analyses.

2019-10-01 | GSE121777 | GEO

Transcriptome analysis of the effect of far-red light on hypocotyl elongation of pumpkin

Project description:The mechanism of hypocotyl elongation in pumpkin mediate by end of day far red was analyzed by transcriptome analysis

2021-04-28 | GSE173421 | GEO

Genome-wide RNA-Seq of rRNA depleted total RNA from Arabidopsis thaliana WT (Col-0) and pumpkin mutant

Project description:Purpose: Analyses of transcriptomes of WT and pumpkin mutants, in order to compare gene expression of typically NEP or PEP-transcribed plastid genes.

2019-10-01 | GSE121776 | GEO

Project description:Pumpkin

| PRJNA783461 | ENA

Project description:study of microbial diversity in rhizosphere soil of pumpkin

| PRJNA678604 | ENA

Identificatrion of marker peptides for the oilseed species chia, coconut, flaxseed, hemp, pumpkin, rapeseed, sesame, and sunflower

Project description:Food fraud is a common issue in the modern food industry. The undeclared use of foreign pro-teins in meat products is a major concern in this context. Oilseeds are ideal for this purpose due to their high protein content and since huge amounts of oil meals are obtained as a by-product of oil production. Therefore, a UHPLC-MS/MS method was developed for the simultaneous de-tection of chia, coconut, flaxseed, hemp, peanut, pumpkin, rapeseed, sesame, soy, and sunflower proteins in meat products. Potential tryptic peptide markers were identified by high-resolution mass spectrometry. The final twenty peptide markers selected, which are specific for one of the ten species targeted were each measured by multiple reaction monitoring. To the best of our knowledge, twelve new heat-stable marker peptides for chia, coconut, flaxseed, pumpkin, rape-seed, sesame and sunflower have not been reported previously.

2022-08-12 | PXD035260 | Pride

Project description:Transcriptome data of watermelon/pumpkin grafting. Data for rootstock (Pumpkin)

| PRJNA1155326 | ENA

Org.one project - Pumpkin Ash

Project description:Org.one project - Pumpkin Ash

| PRJEB70727 | ENA

Project description:Pumpkin (Cucurbita moschata) sequencing

| PRJNA844543 | ENA

pumpkin

Project description:two pumpkin transcript sequence

| PRJEB4748 | ENA