Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Function of the inverted repeat on the chloroplast genome of Nicotiana tabacum

PROVIDER: PRJNA1035449 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26663321.fastq.gz	Fastqsanger.gz
	SRR26663322.fastq.gz	Fastqsanger.gz
	SRR26663323.fastq.gz	Fastqsanger.gz
	SRR26663324.fastq.gz	Fastqsanger.gz
	SRR26663325.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Genome wide expression analysis of psaA and psbA tobacco mutant plants.

Project description:Transcriptome analysis in tobacco mutant plants using tomato Genechip Genome array Tobacco (Nicotiana tabacum cv. Petit Havanna) psaA and psbA deletion mutants were constructed through a targeted deletion of 767 and 1152 nucleotides of coding regions, respectively with two gene cassettes: psbAproR:uidA:psbterR and rrnR:aadA:rbcLterR coding for GUS reporter and spectinomycin selectable marker genes, respectively. Standard established procedures were followed for chloroplast transformation to generate the psaA and psbA deletion mutants based on the homologous recombination. Gene expression profiles in psaA and psbA tobacco mutant plants were analyzed using tomato Genechip Genome array to study the global changes in the expression of genome.

2011-08-02 | GSE23626 | GEO

Identification of miRNAs and their target genes in Bemisia tabaci when feeding on Nicotiana tabacum plants

Project description:The study aims to identify and analyze the miRNAs in Bemisia tabaci that feed on Nicotiana tabacum cv. NC89 plants. This allows for the investigation of insect miRNAs that play important physiological roles in Bemisia tabaci. Additionally, it enables the analysis and identification of miRNAs that are transferred from Nicotiana tabacum to Bemisia tabaci. These data can further help us understand the role of miRNAs in the interaction between Bemisia tabaci and its host plants.

2025-03-29 | GSE292778 | GEO

Genome wide expression analysis of psaA and psbA tobacco mutant plants.

2011-08-01 | E-GEOD-23626 | biostudies-arrayexpress

Tobacco RNA Dependent RNA Polymerase 1 affects the expression of defence related genes in Nicotiana benthamiana during geminivirus infection

Project description:RNA dependent RNA Polymerase 1 of Nicotiana tabacum modulates ToLCV pathogenesis by influencing a number of defence related genes in N. benthamiana plants.

2020-06-03 | GSE144074 | GEO

Transcriptome profiling of male gametophyte development in Nicotiana tabacum

Project description:Transcriptome profiling of three developmental stages of immature male gametophyte intobacco (Nicotiana tabacum)

2014-10-16 | GSE62349 | GEO

Tobacco pollen sequestrome dynamics

Project description:Transcriptome profiling of four RNA fractions in six developmental stages of tobacco (Nicotiana tabacum) male gametophyte

2018-05-24 | GSE114806 | GEO

Transcription profiling of Nicotiana tabacum tissues throughout the lifecycle to generate the Tobacco Expression Atlas (TobEA)

Project description:Gene expression was measured in different tissues throughout the lifecycle of the Nicotiana tabacum plant to generate the Tobacco Expression Atlas (TobEA).

2009-12-05 | E-MTAB-176 | biostudies-arrayexpress

Transcription profiling of Nicotiana tabacum grown in different light conditions to test the reproducibility of a custom Affymetrix microarray for tobacco

Project description:A study was carried out to compare gene expression levels between technical replicate samples in order to test the reproducibility of a custom Affymetrix microarray for Tobacco (Nicotiana tabacum).

2009-01-01 | E-MTAB-72 | biostudies-arrayexpress

Highly resolved systems biology to dissect the etioplast-to-chloroplast transition in tobacco leaves

Project description:Upon exposure to light, plant cells quickly acquire photosynthetic competence by converting pale etioplasts into green chloroplasts. This developmental transition involves the de novo biogenesis of the thylakoid system, and requires reprogramming of metabolism and gene expression. Etioplast-to-chloroplast differentiation involves massive changes in plastid ultrastructure, but how these changes are connected to specific changes in physiology, metabolism and expression of the plastid and nuclear genomes is poorly understood. Here a new experimental system in the dicotyledonous model plant tobacco (Nicotiana tabacum) that allows us to study the leaf de-etiolation process at the systems level. We have determined the accumulation kinetics of photosynthetic complexes, pigments, lipids and soluble metabolites, and recorded the dynamic changes in plastid ultrastructure and in the nuclear and plastid transcriptomes. Our data describe the greening process at high temporal resolution, resolve distinct genetic and metabolic phases during de-etiolation, and reveal numerous candidate genes that may be involved in light-induced chloroplast development and thylakoid biogenesis.

2019-03-09 | GSE128049 | GEO

Solanaceae comparative gene expression profiling

Project description:Six different Solanaceae species, Potato (Solanum tuberosum), Tomato (Lycopersicum esculentum), Pepper (Capsicum annuum), Tobacco (Nicotiana tabacum), Petunia and Nicotiana benthamiana were grown at 25C, 16h light and 8h darkness. Mature leaves were harvested after 4-6 weeks. RNA was isolated using Qiagen RNeasy. Tomato, pepper, petunia tobacco and N. benthamiana samples were hybridized against potato samples. Keywords: Direct comaprison

2007-09-01 | GSE8234 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data