Project description:Identifying the differentially expressed proteins of Riemerella anatipestifer CH-1 and CH-1_zntR under TSB condition through proteomic analysis
Project description:Identifying the differentially expressed genes of Riemerella anatipestifer CH-1 and CH-1_zntR under normal condition through RNA sequencing.
2025-01-18 | GSE286539 | GEO
Project description:Transcriptome sequencing of Riemerella anatipestifer CH-1 and CH-1_zntR under TSB condition
| PRJNA1156311 | ENA
Project description:Transcriptome sequencing of Riemerella anatipestifer CH-1 and CH-1_mntR under TSB condition
Project description:We performed comparative transcriptomic analysis of the outer membrane vesicles (OMVs) released from B. burgdorferi. We identified a total of ~1200 unique transcripts with at least one mapped read from the bacterial cell and its OMVs.
Project description:The alveolar epithelial cell injury is essential for the initaitation and maintenance of inflammatory of lung in ARDS. Outer membrane vesicles (OMVs) are nanoparticles produced by the extrusion of the outer membrane of gram-negative bacteria deliver a range of bacterial molecules to host cells. Recent findings describe OMVs play vital roles in bacterial colonization, delivery of virulence factors, and disease pathogenesis. We here report OMVs as a key regulator of gene expression in primary alveolar epithelial cell.
Project description:Infectious serositis of ducks caused by Riemerella anatipestifer infection has brought great losses to poultry industry all over the world. Adhesion and invasion were important pathway of the infection of Riemerella anatipestifer. Gram-negative pathogens’ adhesion and invasion of host cells by means of outer membrane proteins was a common phenomenon. Here, by using LC-MS/MS, we determined the adhesins belonging to the outer membrane protein of Riemerella anatipestifer RA-YM strain.
2024-10-27 | PXD057236 |
Project description:Transcriptome sequencing of Riemerella anatipestifer CH-1 under iron-repleted condition and iron-depleted condition
Project description:Riemerella anatipestifer can cause infectious serositis in ducklings with high mortality. As a bacterial adhesin receptor, membrane cofactor CD46 plays a role in the process of bacterial adhesion to the host. Outer membrane protein (OMP) is necessary for Gram-negative bacteria to adhere, colonize and cause diseases. Therefore, we used duck CD46 protein (dCD46) as bait protein, and screened out the OMPs of Riemerella anatipestifer which can interact with dCD46 by pull-down test, and searched for the adhesion protein of Riemerella anatipestifer, which laid a foundation for the prevention of Riemerella anatipestifer.
Project description:Helicobacter pylori, a bacterium that colonizes the human stomach, like all Gram-negative bacteria spontaneously shed outer membrane vesicles (OMVs). OMVs, which act as a delivery system for bacterial components, are involved in bacterial-host interactions and thus contribute to pathogenesis. In this study, to understand the gene expression changes that human gastric epithelial cells might undergo when exposed to H. pylori-OMVs, we profiled the transcriptomic changes of the MKN74 gastric cell line induced by OMVs compared to control cells and H. pylori-infected cells, using the Ion AmpliSeq™ Transcriptome Human Gene Expression Panel. The top enriched pathways in the OMVs challenge condition included amino acid-related metabolic pathways, mitogen-activated protein kinase signaling, autophagy, and ferroptosis. The cell cycle, DNA replication, and repair pathways were the top diminished pathways. The transcriptomic changes induced by OMVs were largely consistent with those of the bacteria, although often at low expression levels, suggesting that their effects will mostly reinforce those of the bacterium itself. Our data provide a valuable portrayal of the transcriptomic remodeling of gastric cells by H. pylori-OMVs, which can be further dissected regarding the underlying molecular mediators and explored to understand the pathobiology of the full-spectrum of H. pylori-mediated diseases.