Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome sequencing of outer membrane vesicles (OMVs) from Riemerella anatipestifer CH-1 under TSB condition

PROVIDER: PRJNA1066124 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27602246_1.fastq.gz	Fastqsanger.gz
	SRR27602246_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Proteomic analysis of Riemerella anatipestifer CH-1 and CH-1_zntR under normal conditions

Project description:Identifying the differentially expressed proteins of Riemerella anatipestifer CH-1 and CH-1_zntR under TSB condition through proteomic analysis

2025-02-13 | PXD055543 | Pride

Transcriptome sequencing of Riemerella anatipestifer CH-1 and CH-1_zntR under TSB condition

Project description:Identifying the differentially expressed genes of Riemerella anatipestifer CH-1 and CH-1_zntR under normal condition through RNA sequencing.

2025-01-18 | GSE286539 | GEO

Project description:Transcriptome sequencing of Riemerella anatipestifer CH-1 and CH-1_mntR under TSB condition

| PRJNA909940 | ENA

Project description:Transcriptome sequencing of Riemerella anatipestifer CH-1 and CH-1_padR2 under TSB condition

| PRJNA1477220 | ENA

Project description:Transcriptome sequencing of Riemerella anatipestifer CH-1 and CH-1_zntR under TSB condition

| PRJNA1156311 | ENA

Effect of OMVs on gene expression of primary alveolar epithelial cell

Project description:The alveolar epithelial cell injury is essential for the initaitation and maintenance of inflammatory of lung in ARDS. Outer membrane vesicles (OMVs) are nanoparticles produced by the extrusion of the outer membrane of gram-negative bacteria deliver a range of bacterial molecules to host cells. Recent findings describe OMVs play vital roles in bacterial colonization, delivery of virulence factors, and disease pathogenesis. We here report OMVs as a key regulator of gene expression in primary alveolar epithelial cell.

2025-12-30 | GSE255442 | GEO

mRNA transcript distribution bias between Borrelia burgdorferi bacteria and their outer membrane vesicles

Project description:We performed comparative transcriptomic analysis of the outer membrane vesicles (OMVs) released from B. burgdorferi. We identified a total of ~1200 unique transcripts with at least one mapped read from the bacterial cell and its OMVs.

2018-06-21 | GSE114368 | GEO

DNA-seq of Xylella fastidiosa OMVs and WCL

Project description:Xylella fastidiosa is a Gram-negative plant pathogen responsible for severe diseases in a variety of economically important crops. A critical aspect of its pathogenicity is the production of outer membrane vesicles (OMVs). While some knowledge exists on the molecular cargo of X. fastidiosa (Xf)-OMVs, nucleic acid cargoes remain unknown. Since OMVs protect DNA from degradation during transfer, vesiduction increases the efficiency of HGT, aiding bacterial evolution and adaptation. In order to understand if this mechanism is relevant for Xf, we sequenced DNA extracted from OMVs and compared it to DNA extracted from whole bacterial cells.

2025-05-30 | E-MTAB-14493 | biostudies-arrayexpress

RNA-seq of Xylella fastidiosa OMVs and WCL

Project description:Xylella fastidiosa is a Gram-negative plant pathogen responsible for severe diseases in a variety of economically important crops. A critical aspect of its pathogenicity is the production of outer membrane vesicles (OMVs). While some knowledge exists on the molecular cargo of X. fastidiosa (Xf)-OMVs, nucleic acid cargoes remain unknown. Other bacterial species show modulation of host immune signaling by OMV-packaged RNAs, aiding bacterial infection success. In order to understand if Xf employs a similar mechanism, we sequenced total RNA extracted from OMVs and compared it to RNA extracted from whole bacterial cells.

2025-05-30 | E-MTAB-14502 | biostudies-arrayexpress

Adhesins, which could adhere to the duck embryo cell that belongs to the outer membrane proteins of Riemerella anatipestifer RA-YM strain sequencing by mass spectrometry (LC-MS/MS)

Project description:Infectious serositis of ducks caused by Riemerella anatipestifer infection has brought great losses to poultry industry all over the world. Adhesion and invasion were important pathway of the infection of Riemerella anatipestifer. Gram-negative pathogens’ adhesion and invasion of host cells by means of outer membrane proteins was a common phenomenon. Here, by using LC-MS/MS, we determined the adhesins belonging to the outer membrane protein of Riemerella anatipestifer RA-YM strain.

| PXD057236 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data