Project description:Chromatin immunoprecipitation analysis of CENH3 in the Arabidopsis thaliana accessions Col-0, Ler-0, Cvi-0 and Tanz-1 was performed in order to align reads to PacBio HiFi genome assemblies which contain complete centromere repeat arrays.
Project description:Dikaryotic rust fungi maintain two distinct haploid nuclei for most of their life cycle, making their large, repeat-rich genomes difficult to assemble and phase. Here we present haplotype-phased, near chromosome-scale genome assemblies for the poplar rust pathogens Melampsora larici-populina 98AG31 and Melampsora allii-populina 12AY07, generated using PacBio HiFi sequencing and Hi-C-guided scaffolding. For each species, we resolve 18 chromosomes per haplotype, providing the first chromosome-level representations of poplar rust fungal species. M. larici-populina diploid assembly spans ~203 Mb, while M. allii-populina reaches ~416 Mb, with high completeness and strong collinearity between haplotypes.
2026-06-24 | GSE328168 | GEO
Project description:PacBio HiFi sequencing of Eucommia ulmoides
| PRJNA1129334 | ENA
Project description:Pacbio HiFi sequencing of crested ibis
| PRJNA974878 | ENA
Project description:PacBio HiFi sequencing of Ilex rotunda
| PRJNA1088788 | ENA
Project description:Pacbio HiFi sequencing of Crateva unilocularis