Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Effect of hFWE KO on gene expression in mature epidermal organoids

ABSTRACT: Effect of hFWE KO on gene expression in mature epidermal organoids

PROVIDER: PRJNA1124043 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29413800_1.fastq.gz	Fastqsanger.gz
	SRR29413800_2.fastq.gz	Fastqsanger.gz
	SRR29413801_1.fastq.gz	Fastqsanger.gz
	SRR29413801_2.fastq.gz	Fastqsanger.gz
	SRR29413802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

scRNA-seq data from GLI3 KO in brain organoids

Project description:To study the effect of GLI3 knockout in brain organoids, we collected scRNA-seq data from 45 day old brain organoids with GLI3 KO

2022-08-19 | E-MTAB-11997 | biostudies-arrayexpress

Effect of Pax6 KO in mouse conjunctival organoids

Project description:Effect of Pax6 KO in mouse conjunctival organoids

| PRJNA848379 | ENA

Effect of Pax6 KO in mouse conjunctival organoids

Project description:We sought the differences between WT and Pax6-KO mouse conjunctiva organoids.

2024-01-11 | GSE205926 | GEO

scRNAseq of AKP Mex3a KO mouse colorectal organoids in FOLFIRI treatment

Project description:Mex3a is an RNA binding protein of unknown function. To elucidate the contribution of Mex3a to tumoral heterogeneity, Mex3a KO organoids engineered by CRISPR were sequenced in three different conditions. Live organoids (DAPI negative) were sorted in Control, after 2 days of FOLFIRI and after 5 days of treatment. Two WT organoids (parental and a derived clone) and two KO (KO1 and KO2, two independent clones) were used for this experiment.

2022-05-16 | E-MTAB-11146 | biostudies-arrayexpress

Construction of Human Primary Epidermal Organoids and Modeling of Dermatophyte Infection

Project description:Despite the strong need for the large-scale generation of human epidermal cells for cell therapy of extensive and severe skin injury, tissue-engineered skin construction and dermatological investigation, the effectiveness of current culture methods is limited and have yet to meet the huge demands sufficiently. Here, we report the establishment of a simple and robust 3D culture system using chemical defined, serum-free medium supplemented with small molecules and growth factors, tailored for human epidermal organoids generation and expansion. The conditions allowed 10,000-fold expansion of the primary epidermal cells within 6 weeks, with the cell architecture and gene expression preserved. We further noticed that only Integrin α6-positive basal stem cells freshly isolated from human epidermis could form expandable epidermal organoids. The epidermal cells inside of the organoids also have the potential to reconstruct multi-layered human epidermis equivalents under classical air-liquid interface condition. Remarkably, the epidermal organoids enable to model the anthropophilic and epidermis-restricted Trichophyton Rubrum infection. This model faithfully mimics and reflects the clinical pathological reactions of reinforced physical barrier by promoting keratinocytes differentiation and accelerated formation of the stratum corneum for adaptation and resistance to infection. Furthermore, the infection model also suggested that constraining host IL-1 signaling may underline the high degree of adaptation of Trichophyton Rubrum to human skin, and the tendency to be chronic and recurrent infection. Thus, human epidermal organoids present a powerful platform for modeling human dermatology, skin tissue engineering and cell therapy.

2020-03-01 | GSE134403 | GEO

Both wnt signaling and epidermal stem cell-derived exosomes are involved in epidermal development

Project description:Millions suffer from skin diseases. Functional epidermal stem cells are needed in skin therapy or drug screening in vitro. We obtained functional epidermal stem cells with intact stemness and cell junctions by treating them with wnt3a. Moreover, epidermal stem cell-derived exosomes were useful in epidermal development. Finally, functional epidermal 3D organoids with polarity were cultured using wnt3a and the supernatant derived from epidermal stem cells and fresh medium in a 1:1 ratio. These results provide novel directions for the improvement of skin organoids and their potential in clinical application.

2020-07-14 | PXD020351 |

Multiome experiment from GLI3 KO brain organoids

Project description:To study the effect of GLI3 knockout on early brain organoid development, we collected single-cell multiome data from 18 day old brain organoids

2022-08-25 | E-MTAB-12002 | biostudies-arrayexpress

1,25(OH)D3 effect on colonic organoids from wt and VDR KO mice

Project description:1,25(OH)D3 effect on colonic organoids from wt and VDR KO mice

| PRJNA414728 | ENA

Bulk RNA-seq of wild type, HNF4A-knockout (KO), HNF4G-KO, and HNF4A/4G-double KO (DKO) kidney organoids

Project description:We performed bulk RNA-seq and compared complehensive gene expression profiles of kidney organoids induced from wild type, HNF4A-KO, HNF4G-KO, and HNF4A/4G-DKO iPS cell lines.

2023-10-23 | GSE226439 | GEO

Targeted ErbB3 loss in mammary organoids harvested from ErbB3 DOX-KO mice +/- DOX treatment

Project description:Mammary organoids harvested from ErbB3 DOX-KO mice, which utilize MMTV-Cre transgene expression in the LE to cause genomic recombination at floxed ErbB3 alleles in ErbB3FL/FL were cultured in the presence or absence of doxycycline to induce ErbB3 loss. The gene expression shift following DOX-induced ErbB3 loss in the 3D organoids was examined by microarray. Gene expression patterns were interrogated in mammary organoids from ErbB3 inducible-knockout mice cultured in the presence of absence of doxycycline. Three biological replicates of the experiment were performed, resulting in a total of 6 samples (3 treatment, 3 control).

2012-01-04 | E-GEOD-32129 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data