Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: A near telomere-to-telomere phased reference assembly for the male mountain gorilla - ONT reads

PROVIDER: PRJNA1214581 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32089991_subreads.fastq.gz	Fastqsanger.gz
	SRR32089992_subreads.fastq.gz	Fastqsanger.gz
	SRR32089993_subreads.fastq.gz	Fastqsanger.gz
	SRR32089994_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

A near telomere-to-telomere phased reference assembly for the male mountain gorilla

Project description:A near telomere-to-telomere phased reference assembly for the male mountain gorilla

| PRJEB87592 | ENA

Project description:A near telomere-to-telomere phased reference assembly for the male mountain gorilla

| PRJNA1214493 | ENA

ONT ULK sequencing of a male cape dune mole-rat kidney sample

Project description:One ONT-ULK sequencing run from the kidney of a single male CDMR (Bathyergus suillus) sample used to make the mBatSui1.1.primary genome assembly as an evolutionary comparator to our telomere-to-telomere naked mole-rat genome assembly. Specifically, we assembled a CDMR from a wild-derived sample in South African cape and sequenced in Toronto, Canada, using PacBio HiFi (89 Gb, read N50 = 18 Kb) and ONT-ULK (55 Gb, read N50 = 43 Kb) reads (contig N50 = 33 Mb, Compleasm S = 99%, QV = 71.0). This accession stores the ONT-ULK data for this assembly.

2026-08-05 | E-MTAB-17420 | biostudies-arrayexpress

Pacbio Hifi sequencing of a male cape dune mole-rat kidney sample

Project description:One PacBio Hifi sequencing run from the kidney of a single male CDMR (Bathyergus suillus) sample used to make the mBatSui1.1.primary genome assembly as an evolutionary comparator to our telomere-to-telomere naked mole-rat genome assembly. Specifically, we assembled a CDMR from a wild-derived sample in South African cape and sequenced in Toronto, Canada, using PacBio HiFi (89 Gb, read N50 = 18 Kb) and ONT-ULK (55 Gb, read N50 = 43 Kb) reads (contig N50 = 33 Mb, Compleasm S = 99%, QV = 71.0). This accession stores the Pacbio Hifi data for this assembly.

2026-08-05 | E-MTAB-17312 | biostudies-arrayexpress

ONT R10.4-Lsk sequencing of a naked mole-rat male subordinate. Sheared kidney, unsheared kidney, and brain samples

Project description:Two PacBio Hifi sequencing runs from the kidney of a single male NMR sample used to make the mHetGla4.1.primary genome assembly. Specifically, we assembled a second NMR genome from an unrelated male of a separate captive colony in Toronto, Canada, using PacBio HiFi (155.8 Gb, read N50 = 11.45 Kb) and ONT-LSK (299.6 Gb, read N50 = 10.1 Kb) reads (contig N50 = 75.7 Mb, Compleasm S = 98%). This accession stores the ONT-LSK data for this independent assembly.

2026-08-06 | E-MTAB-17334 | biostudies-arrayexpress

Subtelomeric CTCF and Cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Project description:We investigated the reported binding of telomere associated factor TERF1 and TERF2 to internal telomere sites using ChIP-Seq for these two factors in a lymphoblastoid cell line. We mapped over 40 million reads for each sample to a custom reference genome that incorporates our subtelomere assembly, and generated signal tracks using only uniquely mapping reads, and also using a multimapping pipeline we developed. We find that peaks are misshapen and made up of reads that cannot be distinguished from true telomere sequence. Removing telomere identified reads removes all internal signal.

2014-02-18 | GSE55053 | GEO

Pacbio Hifi sequencing of a naked mole-rat male subordinate kidney sample

2026-08-05 | E-MTAB-17313 | biostudies-arrayexpress

Subtelomeric CTCF and Cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

2014-02-18 | E-GEOD-55053 | biostudies-arrayexpress

Near telomere to telomere genome assembly of Fujian Longyan Shan-ma duck (Anas platyrhynchos)

Project description:The domestic duck (Anas platyrhynchos) is an economically important poultry species and a valuable model for studying avian domestication and trait diversification. High-quality reference genomes have been generated for meat-type ducks, including Pekin duck. By contrast, genomic resources for laying-type breeds remain limited, constraining comparative analyses across divergent production types. Here, we present a near telomere-to-telomere (T2T) genome assembly of the female Fujian Longyan Shan-ma duck (A. platyrhynchos-FJLY), a representative laying-type breed.

2026-06-30 | GSE337118 | GEO

Gene expression profiling of the olm (Proteus anguinus)

Project description:The study comprises a hybrid transcriptome assembly of the olm (Proteus anguinus) that was created from Illumina short-reads and ONT long-reads. The transcriptome assembly is based on samples from six organs animals: brain, gut, heart, liver, lung and skin. In addition, we used the assembled transcripts and Illumina short-reads from two to three animals per organ to profile the gene expression in the olm.

2025-02-21 | GSE286268 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data