Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Ecosystem Monitoring 2025

PROVIDER: PRJNA1230396 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32540200_1.fastq.gz	Fastqsanger.gz
	SRR32540200_2.fastq.gz	Fastqsanger.gz
	SRR32540300_1.fastq.gz	Fastqsanger.gz
	SRR32540300_2.fastq.gz	Fastqsanger.gz
	SRR32573200_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 346

Similar Datasets

Evolution experiment tub2T238A

Project description:Laboratory evolution experiments of yeast cells impaired for microtubule dynamics. The sequencing was done at two time-points, early and late, to identify compensatory mutations. For details see Macaluso et al, Cell Reports, 2025.

2025-01-08 | E-MTAB-14739 | biostudies-arrayexpress

Padarn eDNA: annual time series with eDNA metabarcoding.

Project description:Biodiversity monitoring of a lake ecosystem through eDNA metabarcoding

| PRJEB13009 | ENA

MicroRNA microarray analysis for Primary human nasal epithelial cells (HNECs) treated with or without P1

Project description:We investigated the microRNAs profiles upon nasal epithelial HNECs stimulation by P1 after treatment with or in absence of P1 for 6 hours, comparatively by microRNA array analysis. Three untreated and treated paired samples from three independent experiments were analyzed by GeneChip miRNA 4.0 arrays (Affymetrix, Thermo Fisher) containing probes for 2578 human mature microRNAs and 2025 pre-mature microRNAs

2020-09-04 | GSE157449 | GEO

Analysis of natural wheat and spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation

Project description:This SuperSeries is composed of the following subset Series: GSE15686: Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation (I) GSE15691: Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation (I) GSE15692: Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation (II) GSE15693: Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation (II) Refer to individual Series

2010-07-07 | E-GEOD-15803 | biostudies-arrayexpress

Environmental DNA Enhancement of Fisheries Independent Monitoring Cruises for Ecosystem Based Fisheries Management

Project description:Environmental DNA Enhancement of Fisheries Independent Monitoring Cruises for Ecosystem Based Fisheries Management

| PRJNA887015 | ENA

Project description:Metagenomic profiling of floodplain wetlands for ecosystem health monitoring (FREM/20-23/17)

| PRJNA917796 | ENA

Artificial reforestation has less diverse soil nitrogen-cycling genes than natural restoration

Project description:Reforestation is effective in restoring ecosystem functions and enhancing ecosystem services of degraded land. The three most commonly employed reforestation methods of natural reforestation, artificial reforestation with native Masson pine (Pinus massoniana Lamb.), and introduced slash pine (Pinus elliottii Engelm.) plantations were equally successful in biomass yield in southern China. However, it is not known if soil ecosystem functions, such as nitrogen (N) cycling, are also successfully restored. Here, we employed a functional microarray to illustrate soil N cycling. The composition and interactions of N-cycling genes in soils varied significantly with reforestation method. Natural reforestation had more superior organization of N-cycling genes, and higher functional potential (abundance of ammonification, denitrification, assimilatory, and dissimilatory nitrate reduction to ammonium genes) in soils, providing molecular insight into the effects of reforestation.

2019-11-04 | GSE100379 | GEO

Transcriptomic profiling permits the identification of pollutant sources and effects in ambient water samples

Project description:The delta smelt (Hypomesus transpacificus) is a pelagic fish species endemic to the Sacramento-San Joaquin Estuary in Northern California, listed as endangered under both the USA Federal and Californian State Endangered Species Acts and acts as an indicator of ecosystem health in its habitat range. Interrogative tools are required to successfully monitor effects of contaminants upon the delta smelt, and to research potential causes of population decline in this species. We used microarray technology to investigate genome-wide effects in 47-day old larvae after a 7-day exposure to ambient water samples from the Sacramento River at a monitoring field station (Hood) situated 8 miles downstream of the Sacramento regional Wastewater Treatment Plant. Genomic assessments were carried out on surviving organisms and contrasted to laboratory controls.

2012-09-20 | GSE40991 | GEO

Scalable production of human cortical organoids using a biocompatible polymer

Project description:Single cell RNA-seq characterization of human induced pluripotent stem cells-derived human cortical organoids (hCO) cultured in control and XG-supplemented conditions Reference: Narazaki, Genta; Miura, Yuki; Pavlov, Sergey D.; Thete, Mayuri Vijay; Roth, Julien G.; Avar, Merve; Kim, Ji-il; Hudacova, Zuzana; Heilshorn, Sarah C.; Pașca, Sergiu P. Scalable production of human cortical organoids using a biocompatible polymer. GSE232581. DOI: (2025).

2025-03-18 | GSE232581 | GEO

Project description:2025-001

| PRJEB87499 | ENA