Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Characterization of the chicken transcriptome in response to infectious bronchitis virus infection

PROVIDER: PRJNA1262004 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33536727_1.fastq.gz	Fastqsanger.gz
	SRR33536727_2.fastq.gz	Fastqsanger.gz
	SRR33536728_1.fastq.gz	Fastqsanger.gz
	SRR33536728_2.fastq.gz	Fastqsanger.gz
	SRR33536729_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 111

Similar Datasets

Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus

Project description:Ribosome profiling (Ribo-Seq) (maps positions of translating ribosomes on the transcriptome) and RNA-Seq (quantifies the transcriptome) analysis of chicken (Gallus gallus) cells infected with Infectious Bronchitis Virus (IBV) strains Beaudette and M41.

2019-06-18 | E-MTAB-7849 | biostudies-arrayexpress

Gene Transcription Profile of Local Innate and Adaptive Immunity during Early Phase of IBV Infection

Project description:To understand the mechanistic basis of local innate and adaptive immunity against infectious bronchitis virus (IBV) at the molecular level, we examined the gene transcription profile of tracheal epithelial layers at 3 days after infection of chickens with an attenuated IBV-Massachusetts strain. Keywords: Disease State Analysis, Early mucosal immune response, FHCRC 13k chicken array

2006-11-03 | GSE6211 | GEO

Gene Transcription Profiles during Development of Mucosal Immunity

Project description:Avian infectious bronchitis virus (IBV) infection is a major chicken viral respiratory disease that causes significant economic losses to the poultry industry worldwide. The local mucosal immune response plays a vital role against the infection of this respiratory virus. Previous studies have indicated that a variety of innate immunity and a Th1 based adaptive immunity are activated in the host’s early defense (3 days post inoculation, dpi) against IBV invasion and they are responsible for the rapid clearance of virus from the local infection. In the present study, we propose to use IBV as a model system to uncover the molecular mechanism of mucosal immunity development by characterizing the kinetics of the local gene transcription profiles in trachea tissues after administration with an attenuated IBV strain (IBV-Mass). More specifically, immune-related gene transcription profiles in trachea at 1, 3, 5, 8, 12 and 21 days after the primary immunization and at 1 and 2 days after a second immunization were monitored using chicken 13K cDNA Microarray. Keywords: time course, cDNA 13k chicken array from FHCRC, IBV-chicken model

2006-11-03 | GSE6198 | GEO

Infectious Bronchitis Virus (IBV) Infection

Project description:Infectious bronchitis virus (IBV), is a coronavirus which infects chickens (Gallus gallus), and is one of the foremost causes of economic loss within the poultry industry, affecting the performance of both meat-type and egg-laying birds. The virus replicates not only in the epithelium of upper and lower respiratory tract tissues, but also in many tissues along the alimentary tract and elsewhere e.g. kidney, oviduct and testes. It can be detected in both respiratory and faecal material. There is increasing evidence that IBV can infect species of bird other than the chicken. Interestingly breeds of chicken vary with respect to the severity of infection with IBV, which may be related to the immune response (Cavanagh, 2006). Here we examine differential expression of genes in the trachea of susceptible and resistant birds, in order to identify genes which may be involved in resistance to IBV.

2015-07-31 | E-TABM-1128 | biostudies-arrayexpress

Project description:Infectious bronchitis virus

| PRJNA577406 | ENA

Project description:Characterization of avian infectious bronchitis virus from USA

| PRJNA556282 | ENA

Project description:Metagenomic Sequencing of Infectious Bronchitis virus from Chicken Tracheal swabs

| PRJNA660897 | ENA

Project description:Infectious Bronchitis Virus in Peru

| PRJNA508398 | ENA

Gallus gallus breed:White Leghorn, layer chicken

Project description:Chicken transcriptome profiling in vitro and in vivo in the context of infectious bronchitis virus (IBV) infection

| PRJNA1088470 | ENA

Transcriptional Profiling of Host Gene Expression in Chicken Embryo Lung Cells Infected with Laryngotracheitis Virus

Project description:Transcriptional profiling of chicken embryo lung cells infected infectious laryngotracheitis virus (ILTV) comparing control uninfected lung cells. Goal was to determine the changes of host gene expression by ILTV infection and host-virus interaction.

2010-03-11 | GSE20630 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data