Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fusarium graminearum

ABSTRACT: Gene expression of vegetative hyphae from Fusarium graminearum

PROVIDER: PRJNA289285 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2093890.fastq.gz	Fastqsanger.gz
	SRR2093891.fastq.gz	Fastqsanger.gz
	SRR2093892.fastq.gz	Fastqsanger.gz
	SRR2093893.fastq.gz	Fastqsanger.gz
	SRR2093894.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Fusarium graminearum

Project description:Gene expression of vegetative hyphae from Fusarium graminearum

| PRJNA390225 | ENA

Fusarium graminearum

Project description:Gene expression from aerial hyphae of Fusarium graminearum

| PRJNA292945 | ENA

Effect of edeine B1 in gene expression of Fusarium graminearum

Project description:To investigate the inhibition metabolism of EB1 in Fusarium graminearum, F.graminearum wild type grown in YPD broth. Then harvested F.graminearum hyphae reacted with EB1 during 1, 2, 4h.

2022-10-02 | GSE214312 | GEO

The global fusarium graminearum gene expressional responses to different nitrogen source and the gene expression changes between histone methylation defective mutants and wild type strain

Project description:Purpose: To assess global changes of fusarium graminearum gene expressional responses to different nitrogen source and gene expression changes after removal different histone methylation hallmarks. Methods: For RNA seq of fusarium, three biological replicates of hyphae after 48/72 hours cultured were sequenced. Results: For each sample, 5.83-8.31G RNA-seq clean reads were obtained mapped to the Fusarium graminearum genome sequence.

2025-04-01 | GSE171288 | GEO

Fusarium graminearum

Project description:Fusarium graminearum Transcriptome or Gene expression

| PRJNA601548 | ENA

Fusarium graminearum

Project description:Fusarium graminearum Transcriptome or Gene expression

| PRJNA655800 | ENA

Fusarium graminearum

Project description:Fusarium graminearum Transcriptome or Gene expression

| PRJNA515580 | ENA

Gene expression during priming-induced resistance to fusarium head blight in wheat as revealed by two distinct mutants of Fusarium graminearum

Project description:Fusarium head blight (FHB) is a major disease of cereal crops caused by the fungus Fusarium graminearum (Fg). FHB affects the flowering heads (or spikes) and developing seeds. This study compare the gene expression profile in wheat spikelets (spk 2) inoculated with either water (mock treatment) or a pathogenic strain of Fusarium graminearum (WT); spikelets 2 were inoculated 24 hrs after a neighbour spikelet (spk 0) was treated with either water or F. graminerum mutant strain Tri6Δ or NoxABΔ. Spikelets 2 were sampled 8 and 24 hrs after the second treatment.

2015-05-28 | GSE55653 | GEO

RNA-seq Analysis of FlbD-, AbaA-, and WetA-dependent Genes in Fusarium graminearum Z-3639

Project description:Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. Conidiogenesis had been intensively studied in Aspergillus nidulans and regulatory pathway genes have been known to regulate conidiogenesis in stage specific manner. We reported the functional analyses of flbD, abaA, and wetA orthologs in F. graminearum. To understand genome-wide transcriptional profiling of conidiation, we employed RNA-seq of the wild-type Fusarium graminearum Z-3639 and each gene deletion mutants with three time courses (0 h, 6 h and 12 h after induction of conidiogenesis). AbaA experiment: 6 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum Z-3639 wild type and ΔabaA(ΔabaA::gen) mutant strains WetA experiment: 3 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum ΔwetA(ΔwetA::gen) mutant strains flbD experiment: 3 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum ΔflbD(ΔflbD::gen) mutant strains

2013-11-10 | E-GEOD-46133 | biostudies-arrayexpress

Fusarium graminearum in vitro secretome

Project description:The plant pathogenic fungus Fusarium graminearum (Fgr) creates economic and health risks in cereals agriculture. Fgr causes head blight (or scab) of wheat and stalk rot of corn, reducing yield, degrading grain quality and polluting downstream food products with mycotoxins. Fungal plant pathogens must secrete proteases to access nutrition and to breakdown the structural protein component of the plant cell wall. Research into the proteolytic activity of Fgr is hindered by the complex nature of the suite of proteases secreted. We used a systems biology approach comprising genome analysis, transcriptomics and label-free quantitative proteomics to characterise the peptidases deployed by Fgr during growth. A combined analysis of published microarray transcriptome datasets revealed seven transcriptional groupings of peptidases based on in vitro growth, in planta growth, and sporulation behaviours. An orbitrap MS/MS proteomics technique defined the extracellular proteases secreted by Fusarium graminearum.

2015-10-06 | PXD002786 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data