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Zea mays

ABSTRACT: Zea mays B73, seedling root tip (0-5mm), whole chromatin, H3K27me3 ChIP

PROVIDER: PRJNA411848 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR6061750_1.fastq.gz	Fastqsanger.gz
	SRR6061750_2.fastq.gz	Fastqsanger.gz
	SRR6061751_1.fastq.gz	Fastqsanger.gz
	SRR6061751_2.fastq.gz	Fastqsanger.gz
	SRR6061752_1.fastq.gz	Fastqsanger.gz

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Zea mays

Project description:Zea mays B73, seedling root tip (0-5mm), RNA-seq, transcription data

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Project description:Zea mays B73, seedling root tip (0-3mm), sorted nuclei, CENH3 ChIP

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Project description:Zea mays B73, seedling root tip (0-3mm), sorted nuclei, H3K9me2 ChIP

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Zea mays B73 seedlings incubated 2 hours in water, primary and seminal root tips (0-1mm), RNA-seq, cellular transcription data

Project description:These maize (Zea mays L.) B73 cellular RNA samples were prepared from seedlings treated in 2 h water and extracted cellular RNA directly from frozen 1-mm root tips. They are parallel experiment to compare to two other types of RNA extracted from isolated nuclei.

2025-06-16 | GSE299561 | GEO

Zea mays B73 seedling primary and seminal root tips (0-1mm), RNA-seq, steady-state transcription data

Project description:Conventional cellular transcriptome profiling (RNA-seq) data reports “steady-state” transcript abundance rather than actual transcription rates in the nucleus. It also lacks sensitivity to detect unstable and low-abundance RNA species. We generated these maize (Zea mays L.) B73 total cellular RNA samples, extracted directly from frozen 1-mm root tips, as a parallel experiment to compare to two other types of RNA extracted from isolated nuclei.

2025-07-24 | GSE278166 | GEO

Expression data from LCM-captured Zea mays root cells after challenge with Meloidogyne incognita

Project description:The differentiation of specialized feeding sites in Zea mays root cells in response to nematode infestation involves substantial cellular reprogramming of host cells that is not well characterized at the molecular level. Expression data was generated from Zea mays root cells undergoing giant cell formation due to nematode infestation and from non-infested control root cells. Cells were laser captured 14 and 21 days after infestation.

2012-04-28 | GSE37556 | GEO

Zea mays Transcriptome or Gene expression

Project description:In this study a transcriptomic approach (RNA-sequencing) was utilized to elucidate molecular responses of maize (Zea mays L.) primary roots of the inbred line B73 to water deficit to gain a better understanding of the mechanisms underlying drought tolerance. Kernels of the maize inbred line B73 were germinated in paper rolls soaked with distilled water until seedlings had a primary root length of 2 to 4 cm. For mild and severe water deficit conditions, seedlings were transferred to PEG8000 solution with water potentials of -0.2 MPa and -0.8 MPa, respectively. Water deficit treatment was applied for 6 h and 24 h. Each treatment was performed in four biological replicates each consisting of 10 roots.

2014-05-03 | E-MTAB-4325 | biostudies-arrayexpress

Zea mays

Project description:Zea mays B73 seedling primary and seminal root tips (0-1mm), RNA-seq, steady-state transcription data

| PRJNA853797 | ENA

Early transcriptional changes in Zea mays seedlings exposed to Z-3-hexenol

Project description:Z-3-Hexenol and other green leaf volatiles have been known to induce defense-related gene expression. Here we investigated the early transcriptional changes in response to Z-3-hexenol. 3-week-old Zea mays seedling (inbred line B73) was exposed to pure Z-3-hexenol (1.5 Î¼M) in a glass cylinder. Controls were treated likewise without the addition of Z-3-hexenol. Plants were exposed for 20 min and 60 min. The second leaf was then cut and shock-frozen in liquid N2 and then stored at -85Â°prior to RNA extraction. 3 individual leaves were pooled for 1 biological replicate. 3 biological replicates were performed for each treatment, with one dye swap (second sample).

2013-06-15 | E-GEOD-47982 | biostudies-arrayexpress

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