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Fusarium graminearum

ABSTRACT: small RNA-seq at 7 day past self-fertilization in Fusarium graminearum strains

PROVIDER: PRJNA431527 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR21708809.fastq.gz	Fastqsanger.gz
	SRR21707787.fastq.gz	Fastqsanger.gz
	SRR6516240.fastq.gz	Fastqsanger.gz
	SRR6516241.fastq.gz	Fastqsanger.gz
	SRR6516242.fastq.gz	Fastqsanger.gz

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Fusarium graminearum

Project description:Strand-specific RNA-seq at 7 day past self-fertilization in Fusarium graminearum strains

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RNA-seq Analysis of FlbD-, AbaA-, and WetA-dependent Genes in Fusarium graminearum Z-3639

Project description:Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. Conidiogenesis had been intensively studied in Aspergillus nidulans and regulatory pathway genes have been known to regulate conidiogenesis in stage specific manner. We reported the functional analyses of flbD, abaA, and wetA orthologs in F. graminearum. To understand genome-wide transcriptional profiling of conidiation, we employed RNA-seq of the wild-type Fusarium graminearum Z-3639 and each gene deletion mutants with three time courses (0 h, 6 h and 12 h after induction of conidiogenesis). AbaA experiment: 6 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum Z-3639 wild type and ΔabaA(ΔabaA::gen) mutant strains WetA experiment: 3 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum ΔwetA(ΔwetA::gen) mutant strains flbD experiment: 3 samples examined: 0 h, 6 h and 12 h after induction of conidiogenesis of Fusarium graminearum ΔflbD(ΔflbD::gen) mutant strains

2013-11-10 | E-GEOD-46133 | biostudies-arrayexpress

Fusarium graminearum

Project description:small RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains

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RNA-seq analysis of FHS1-dependent genes in Fusarium graminearum Z-3639

Project description:Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. Fhs1 contains a Zn(II)2Cys6 fungal-type DNA-binding domain and localized to nuclei , suggesting that Fhs1 is a transcription factor required for hydroxiurea. 6 samples examined: 24 h after inoculation of Fusarium graminearum wild-type Z-3639 and fhs1 (Îfhs1::GEN) strains in complete media

2016-02-22 | E-GEOD-73891 | biostudies-arrayexpress

RNA-seq analysis of transcriptomes at 1 day after sexual induction in Fusarium graminearum strains

Project description:Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect molecular mechanisms for initial stage of perithecia development, we compared transcriptomes of fungal cultures harvested from F. graminearum wild-type strain Z-3639, abaA, and fpo1 at 1 day after sexual induction. 9 samples examined: Fungal cultures harvested from Fusarium graminearum wild-type strain Z-3639, abaA, and fpo1 at 1 day after sexual induction.

2016-05-13 | E-GEOD-79532 | biostudies-arrayexpress

Genome-wide expression profiling in a Fusarium graminearum lacking FgVelB, a velvet complex gene

Project description:Using a 3'-tiling microarray covering the whole F. graminearum genes, we carried out genome-wide expression analyses of both a wild type and a FgVelB deletion strainn of F. graminearum at a sexual stage (3 days after perithecial induction on carrot agar) Our study is the first report elucidating regulatory pathways controlled by FgVelB in Fusarium graminearum. A total of 4 chips were used for microarray. Total RNAs were extracted from perithecia and/or ground mycelia formed on carrot agar cultures of a self-fertile wild-type and a self-sterile FgVelB-deleted strain of F. graminearum with two biological replicates.

2012-08-02 | E-GEOD-36638 | biostudies-arrayexpress

Fusarium graminearum

Project description:small RNA-seq of Fusarium graminearum

| PRJNA888203 | ENA

RNA-seq analysis of transcriptomes at 1 day after sexual induction in Fusarium graminearum strains

2016-05-13 | GSE79532 | GEO

Transcriptome analyses of toxoflavin-dependent genes in Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutants

Project description:Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated toxoflavin-sensitive mutants from transcription factor deletion mutant library of F. graminearum. To understand genome-wide transcriptional profiling, we performed RNA-seq analyses of F. graminearum wild-type strain GZ03639 and toxoflavin-sensitive mutant strains (∆GzZC190, ∆GzC2H008, ∆GzbZIP005) under toxoflavin condition.

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Project description:RNA-seq analysis of transcriptomes at 5 day after sexual induction in Fusarium graminearum strains

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