Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sheep gut metagenome

ABSTRACT: CAAS-39

PROVIDER: PRJNA492722 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7943650_1.fastq.gz	Fastqsanger.gz
	SRR7943650_2.fastq.gz	Fastqsanger.gz
	SRR7943660_1.fastq.gz	Fastqsanger.gz
	SRR7943660_2.fastq.gz	Fastqsanger.gz
	SRR7943670_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 101

Similar Datasets

Relating human gut metagenome and metaproteome

Project description:Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and shotgun metaproteomics. We found a considerable divergence between genetic potential and functional activity of the human healthy gut microbiota, in spite of a quite comparable taxonomic structure revealed by the two approaches. Investigation of inter-individual variability of taxonomic features revealed Bacteroides and Akkermansia as remarkably conserved and variable in abundance within the population, respectively. Firmicutes-driven butyrogenesis (mainly due to Faecalibacterium spp.) was shown to be the functional activity with the higher expression rate and the lower inter-individual variability in the study cohort, highlighting the key importance of the biosynthesis of this microbial by-product for the gut homeostasis. The taxon-specific contribution to functional activities and metabolic tasks was also examined, giving insights into the peculiar role of several gut microbiota members in carbohydrate metabolism (including polysaccharide degradation, glycan transport, glycolysis and short-chain fatty acid production). In conclusion, our results provide useful indications regarding the main functions actively exerted by the gut microbiota members of a healthy human cohort, and support metaproteomics as a valuable approach to investigate the functional role of the gut microbiota in health and disease.

2017-07-19 | PXD005780 | Pride

Ion Torrent RNA-sequencing of exosomes isolated from ovarian cancer cells, fibroblasts and adipocytes

Project description:We used next-generation sequencing to identify differential microRNA (miRNA) signatures in exosomes isolated from ovarian cancer cells and ovarian cancer-associated fibroblasts (CAFs) and adipocytes (CAAs). We found that a significantly higher levels of miR21 isomiRNAs in exosomes isolated from CAFs and CAAs than in those from ovarian cancer cells.

2016-03-21 | GSE77318 | GEO

sheep gut metagenome

Project description:sheep gut metagenome Raw sequence reads-2

| PRJNA398623 | ENA

sheep gut metagenome

Project description:microbial shifts in colonic digesta of sheep Raw sequence reads

| PRJNA386096 | ENA

sheep gut metagenome

Project description:sheep gut metagenome Raw sequence reads

| PRJNA601318 | ENA

sheep gut metagenome

Project description:sheep gut metagenome Genome sequencing