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Genome wide RNA-seq of wild-type and Safa-/- BMDMs upon HSV-1 infection.

ABSTRACT: Genome wide RNA-seq of wild-type and Safa-/- BMDMs upon HSV-1 infection.

PROVIDER: PRJNA494671 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR7963510_1.fastq.gz	Fastqsanger.gz
	SRR7963510_2.fastq.gz	Fastqsanger.gz
	SRR7963511_1.fastq.gz	Fastqsanger.gz
	SRR7963511_2.fastq.gz	Fastqsanger.gz
	SRR7963512_1.fastq.gz	Fastqsanger.gz

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Genome wide RNA-seq of wild-type and Safa-/- BMDMs upon HSV-1 infection.

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wild-type and SAFA-/- cells

Project description:wild-type and SAFA-/- cells

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Genes and transposons expression profiling of wild-type Bone Marrow Derived Macrophages (BMDMs) after VSV and HSV infection.

Project description:Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an emerging and highly pathogenic coronavirus that causes coronavirus disease (COVID-19), and might even lead to death. The long terminal repeat of the endogenous retrovirus (LTR ERVs), a type of mammalian genome elements derived from ancient viruses which infected the host and now accounts for 8% of human genome, are implicated in multi viral pathogenesis and host immune responses. However, their expression patterns and functions during SARS-CoV-2 infection still remain to be uncover. We first identified that SARS-CoV-2 infection could upregualted the expression of TEs and ERVs from the published RNA-seq data. Then in this study, we also conducted the genome-wide analysis of ERVs from wild-type mice Bone Marrow Derived Macrophages (BMDMs) after VSV and HSV infection. Collectively, these results provides the first glimpse into the expression patterns and potentail roles of ERVs after viral infection, and would serve as a valuable resource for future studies on SARS-CoV-2 infection and pathogenesis.

2023-11-30 | GSE244322 | GEO

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