Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Tilapia lake virus isolate BD-2017 from Bangladesh

PROVIDER: PRJNA604966 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11025192_1.fastq.gz	Fastqsanger.gz
	SRR11025192_2.fastq.gz	Fastqsanger.gz
	SRR11025193_1.fastq.gz	Fastqsanger.gz
	SRR11025193_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Proteomic and phosphoproteomic profiling revealed distinct cellular responses during Tilapia Lake Virus infection

Project description:Tilapia Lake Virus (TiLV) poses a significant threat to global tilapia aquaculture, causing high mortality rates and severe economic losses. Despite its impact, the molecular mechanisms of TiLV-host interactions remain poorly understood. This study investigates the proteomic and phosphoproteomic changes in two piscine cell lines, E-11 and RHTiB, following TiLV infection.

2024-09-25 | PXD053604 | JPOST Repository

Uropathogenic Escherichia coli biofilm proteomics

Project description:We previously determined that loss of respiratory quinol oxidase cytochrome bd disrupts biofilm formation in uropathogenic Escherichia coli (UPEC). In this study, we extracted and interrogated the outer membrane and extracellular matrix of colony biofilms formed by UPEC isolate UTI89 and an isogenic mutant lacking cytochrome bd (∆cydAB).

2021-04-01 | PXD023998 | Pride

Citrobacter freundii strain:BD | isolate:BD

Project description:Citrobacter freundii strain:BD | isolate:BD Genome sequencing

| PRJNA357667 | ENA

Vibrio parahaemolyticus AN-5034

Project description:Bangladesh isolate

| PRJNA33625 | ENA

Endogenized hypervirulence-associated DNA virus BdDV-1 is primarily restricted to enzootic lineages of the amphibian pathogen Batrachochytrium dendrobatidis

Project description:The Global Panzootic Lineage (GPL) of the pathogenic fungus Batrachochytrium dendrobatidis (Bd) has caused severe amphibian population declines, yet the drivers underlying the high frequency of GPL in regions of amphibian decline are unclear. Using publicly available Bd genome sequences, we identified multiple non-GPL Bd isolates that contain a circular Rep-encoding single stranded DNA-like virus which we named BdDV-1. We further sequenced and constructed genome assemblies with long read sequences to find that the virus is integrated into the nuclear genome in some strains. Attempts to cure virus positive isolates were unsuccessful, however, phenotypic differences between naturally virus positive and virus negative Bd isolates suggested that BdDV-1 decreases the growth of its host in vitro but increases the virulence of its host in vivo. BdDV-1 is the first described CRESS DNA mycovirus associated with hypervirulence with a distribution inversely associated with the emergence of the panzootic lineage.

2023-11-05 | GSE246809 | GEO

Tilapia lake virus strain:mutiple | isolate:multiple

Project description:Tilapia lake virus segment 1 PCR amplification and nanopore sequencing

| PRJNA703741 | ENA

Project description:Genome Sequence of Tilapia Lake Virus Associated With Syncytial Hepatitis of Tilapia in an Ecuador Aquaculture Facility

| PRJNA526870 | ENA

Project description:Dengue virus sequencing from Bangladesh

| PRJNA672124 | ENA

Salmonella enterica subsp. enterica serovar Typhi str. E98-2068

Project description:Clinical isolate from Bangladesh

| PRJEA28301 | ENA

Project description:RNA sequencing of E11 cells infected with a rescued tilapia lake virus