Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Investigation of an elevational gradient reveals strong differences between bacterial and eukaryotic communities coinhabiting Nepenthes phytotelmata

PROVIDER: PRJNA607326 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11104300.fastq.gz	Fastqsanger.gz
	SRR11104301.fastq.gz	Fastqsanger.gz
	SRR11104302.fastq.gz	Fastqsanger.gz
	SRR11104303.fastq.gz	Fastqsanger.gz
	SRR11104304.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

soil metagenome

Project description:Contrasting elevational diversity patterns between eukaryotic soil microbes and plants

| PRJDB2694 | ENA

Temperature and livestock grazing trigger transcriptome responses in bumblebees along an elevational gradient

Project description:It is assumed that climate and land-use changes cause increasing stress to pollinators, which play pivotal roles in almost all terrestrial ecosystems, with consequences on population growth, diversity and ecosystem functions. While these responses to global change drivers are well located, the molecular pathways triggering the response are poorly understood. We analysed the transcriptomic response of Bombus lucorum workers in their systematic responses to temperature and livestock grazing, sampled along an elevational gradient from 650 – 1930 m.a.s.l., and from differently managed grassland sites (livestock grazing vs. unmanaged) in and around the National Park Berchtesgaden (German Alps).

2022-09-14 | GSE198931 | GEO

Project description:Population genetic variation in four grasshoppers along an elevational gradient

| PRJNA547722 | ENA

Mapping nucleosome resolution chromosome folding in yeast by Micro-C

Project description:We describe a Hi-C based method, Micro-C, in which micrococcal nuclease is used instead of restriction enzymes to fragment chromatin, enabling nucleosome resolution chromosome folding maps. Analysis of Micro-C maps for budding yeast reveals abundant self-associating domains similar to those reported in other species, but not previously observed in yeast. These structures, far shorted than topologically-associating domains in mammals, typically encompass one to five genes in yeast. Strong boundaries between self-associating domains occur at promoters of highly transcribed genes, and regions of rapid histone turnover that are typically bound by the RSC chromatin-remodeling complex. Investigation of chromosome folding in mutants confirms roles for RSC, “gene looping” factor Ssu72, Mediator, H3K56 acetyltransferase Rtt109, and N-terminal tail of H4 in folding of the yeast genome. This approach provides detailed structural maps of a eukaryotic genome and our findings provide insights into the machinery underlying chromosome compaction. Chromatin is fragmented by Mnase, subsequenct nucleosomal end repair, and a modified two-step method for purfiying ligation products. Using Illumina paired-end sequencing maps Micro-C library and generates nucleosome resolution contact maps. The readme.txt file contains additional description of how each processed data file was generated.

2015-06-25 | E-GEOD-68016 | biostudies-arrayexpress

Project description:A developmental gradient reveals biosynthetic pathways to eukaryotic toxins in the Amaryllidaceae

| PRJNA1056253 | ENA

Physically Isolated OptiPrep (TM) Fractions for exRNA Analysis

Project description:An integrative analysis of human biofluid data in the exRNA Atlas revealed the existence of distinct extracellular RNA cargo types. In order to detect differences in density between cargo types, cushioned density gradient ultracentrifugation (C-DGUC) of serum and plasma was performed using OptiPrem (TM) density gradient.

2018-12-15 | GSE123864 | GEO

Mapping nucleosome resolution chromosome folding in yeast by Micro-C

2015-06-25 | GSE68016 | GEO

Project description:Teasel phytotelmata metabarcoding

| PRJNA1177995 | ENA

Transcriptome analysis of the eukaryotic-type ser/thr kinase PknB in Staphylococcus aureus

Project description:The function of the Staphylococcus aureus eukaryotic-like serine/threonine protein kinase PknB was investigated by transcriptome analysis using DNA-microarray technology and biochemical assays. The transcriptional profile reveals a strong regulatory impact of PknB on the expression of genes encoding proteins which are involved in purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, and glutamine synthesis.

2010-03-11 | GSE15346 | GEO

Project description:Biological soil crust communities along an elevational gradient in Reynolds Creek CZO

| PRJNA633217 | ENA