Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: mosquito RNAseq data

PROVIDER: PRJNA686698 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13277508_1.fastq.gz	Fastqsanger.gz
	SRR13277508_2.fastq.gz	Fastqsanger.gz
	SRR13277509_1.fastq.gz	Fastqsanger.gz
	SRR13277509_2.fastq.gz	Fastqsanger.gz
	SRR13277510_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

E-MTAB-7017

Project description:RNASeq data analysis of wild type and reverb alpha knockout cells from mouse liver, at different time points, with or without DEX treatment

2019-01-16 | E-MTAB-7017 | ExpressionAtlas

Project description:Aedes aegypti mosquito sequencing data

| PRJNA954465 | ENA

E-ENAD-35

Project description:HipSci Project - RNAseq of healthy volunteers

2020-07-10 | E-ENAD-35 | ExpressionAtlas

Aedes aegypti NeSt1 interacts with human CD47 to enhance Zika virus infectivity

Project description:Aedes aegypti is a vector of many infectious agents, including flaviviruses like Zika virus. We demonstrate that Nest1, a 34kDa mosquito salivary protein, facilitates Zika virus dissemination in human skin explants. Our aim was to analyze the effect of Nest1 at a transcriptomic level (RNAseq) in human skin explants, in the presence and absence of virus (ZIKV), at different timepoints (day 1, 2,3 ,and 4)

2024-12-05 | GSE239840 | GEO

Swarming sample vs non-swarming sample

Project description:Transcriptional profiling of mosquito head comparing control non-swarming mosquito with swarming mosquito. Screen the genes associated with swarming.

2020-09-19 | GSE150971 | GEO

E-MTAB-8021

Project description:RNAseq on touch-treated Arabidopsis thaliana plants

2020-01-06 | E-MTAB-8021 | ExpressionAtlas

Project description:RNAseq data

| PRJNA1012654 | ENA

Project description:RNAseq data

| PRJNA715961 | ENA

The regulatory genome of the malaria vector Anopheles gambiae: integrating chromatin accessibility and gene expression

Project description:Anopheles gambiae mosquitoes are primary human malaria vectors, but we know very little about their mechanisms of transcriptional regulation. We profiled chromatin accessibility by ATAC-seq in laboratory-reared An. gambiae mosquitoes experimentally infected with the human malaria parasite Plasmodium falciparum. By integrating ATAC-seq, RNA-seq and ChIP-seq data we showed a positive correlation between accessibility at promoters and introns, gene expression and active histone marks. By comparing expression and chromatin structure patterns in different tissues, we were able to infer cis-regulatory elements controlling tissue specific gene expression and to predict the in vivo binding sites of relevant transcription factors. The ATAC-seq assay also allowed the precise mapping of active regulatory regions, including novel transcription start sites and enhancers that annotate to mosquito immune-response genes. This study is important not only for advancing our understanding of mechanisms of transcriptional regulation in the mosquito vector of human malaria, but also the information we produced is of great potential for developing new mosquito-control and anti-malaria strategies.

2020-12-22 | GSE152924 | GEO

RNA sequencing of mosquito transmitted and blood transmitted Plasmodium chabaudi CB parasites and host spleens

Project description:We have published a paper showing that infections using mosquito-transmitted parasites have a quite different effect on the host immune system (Spence et al, Nature, 2013). Here we are repeating the experiment but using a more virulent strain of the parasite: P. chabaudi CB, to study further how mosquito transmission regulates parasite virulence. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2014-08-27 | E-ERAD-289 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data