Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-sequencing of estradiol inducible DOF6 overexpression (DOF6ioex) and rgl2-13 DOF6ioex seeds imbibed in mock or 50µM estradiol for 8h

ABSTRACT: RNA-sequencing of estradiol inducible DOF6 overexpression (DOF6ioex) and rgl2-13 DOF6ioex seeds imbibed in mock or 50µM estradiol for 8h

PROVIDER: PRJNA823917 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18653168.fastq.gz	Fastqsanger.gz
	SRR18653169.fastq.gz	Fastqsanger.gz
	SRR18653170.fastq.gz	Fastqsanger.gz
	SRR18653171.fastq.gz	Fastqsanger.gz
	SRR18653172.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

RNA-sequencing of estradiol inducible DOF6 overexpression (DOF6ioex) and rgl2-13 DOF6ioex seeds imbibed in mock or 50µM estradiol for 8h

Project description:The DELLA protein RGA-LIKE2 (RGL2) is a key transcriptional repressor of gibberellic acid (GA) signaling that regulates seed germination.RGL2 lacks a DNA binding domain and requires a transcription factor to induce GATA12 expression. Our data show that this RGL2-containing protein complex includes DNA BINDING1 ZINC FINGER6 (DOF6), which is a known negative regulator of germination in freshly harvested seeds. The RGL2-DOF6 complex regulates primary seed dormancy in Arabidopsis by regulating downstreming targets.

2023-12-25 | GSE200271 | GEO

Dormant and after-ripened seeds are distinguished by early transcriptional differences in the imbibed state

Project description:We analyzed the transcriptome of dormant and after-ripened imbibed seeds of the Arabidopsis accession Cape verde Islands. We analyzed the transcriptional changes in temporal and spatial detail by sampling at four imbibition time-points (3, 7, 12 and 24 hours after sowing) and two seed compartments (RAD and MCE).

2016-08-24 | GSE76907 | GEO

Expression data from after-ripened wheat seeds imbibed in ABA

Project description:Wheat seed germination and seminal root growth can be inhibited by treatment with exogenous ABA We used Affymetrix GeneChip Wheat Genome Array to detail transcriptional programs affected by ABA during imbibition After-ripened seeds imbibed in ABA for 24 h were used for RNA extraction and hybridization on Affymetrix GeneChip. After-ripened seeds were generated by storing dormant seeds at room temperature for 10 months.

2013-06-05 | E-GEOD-32409 | biostudies-arrayexpress

Dormant and after-ripened seeds are distinguished by early transcriptional differences in the imbibed state

2016-08-24 | E-GEOD-76907 | biostudies-arrayexpress

Expression data from Col-0 and pil5 imbibed seeds after far-red or far-red/red light irradiation.

Project description:PIL5 is a key negative regulator of phytochrome mediated seed germination and PIL5 protein is degraded by red light irradiation through phytochrome. The microarray aimed to find various red light-regulated genes and PIL5-regulated genes in the imbibed seeds. Keywords: genetic modification

2010-01-12 | GSE14374 | GEO

Expression data from imbibed wheat seeds developed at different temperatures

Project description:Expression data from imbibed wheat seeds developed at different temperatures

| PRJNA642897 | ENA

Weissella muntiaci strain:8H-2 | isolate:8H-2

Project description:Weissella muntiaci strain:8H-2 | isolate:8H-2 Genome sequencing and assembly

| PRJNA516300 | ENA

Expression data of seeds imbibed at 22˚C or 4˚C for 24hr of Arabidopsis thaliana

Project description:Keeping imbibed seeds at low temperatures for a certain period, so called seed vernalization (SV) treatment, promotes seed germination and subsequent flowering in various plants. Vernalization-promoting flowering requires GSH. However, the expression patterns analyzed by GeneChip arrays showed that increased GSH biosynthesis partially mimics SV treatment in Arabidopsis thaliana. SV treatment (keeping imbibed seeds at 4°C for 24 h) induced a specific pattern of gene expression and promoted subsequent flowering in wild-type plants. A similar pattern was observed at 22°C in transgenic plants (35S-GSH1 plants) overexpressing the γ-glutamylcysteine synthetase gene GSH1, coding an enzyme limiting GSH biosynthesis, under the control of the cauliflower mosaic virus 35S promoter. This pattern was strengthened at 4°C but flowering was less responsive to SV treatment. There was a difference in the transcript behaviour of the flowering repressor FLC between wild-type and 35S-GSH1 plants. Unlike other genes responsive to SV treatment, SV-dependent decrease in FLC in wild-type plants was reversed in 35S-GSH1 plants. SV treatment increased GSSG level in wild-type seeds, whereas GSSG level was high in 35S-GSH1 plants, even at a non-vernalizing temperature. Taking into consideration that low temperatures stimulate GSH biosynthesis and bring about oxidative stress, GSSG is considered to trigger low temperature response, but enhanced GSH synthesis was not enough for mimicking SV treatment. To complete it, it essentially required the cellular redox retransition from the oxidized to the reduced state that is observed after the seed vernalization treatment.

2012-06-01 | GSE33978 | GEO

Expression data of seeds imbibed at 22˚C or 4˚C for 24hr of Arabidopsis thaliana

2012-05-31 | E-GEOD-33978 | biostudies-arrayexpress

Effect of nitrogen compounds on imbibed mutant seeds impaired in glucosinolate biosynthesis

Project description:Effect of nitrogen compounds on imbibed mutant seeds impaired in glucosinolate biosynthesis

| PRJNA915005 | ENA