Mus musculus
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA96551 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Cerebral cortical-derived neurosphere cultures were exposed to ethanol to model heavy alcohol exposure during the period of cortical neurogenesis Keywords: Compared differentiated neurospheres pre-exposed to ethanol to untreated differentiated neurospheres
2006-09-30 | GSE5152 | GEO
Project description:Gene expression changes in fetuses exposed to ethanol in utero
| PRJNA96491 | ENA
Project description:The fetal cerebral cortical neuroepithelium is a clonal mosaic, wherein populations of neural stem and daughter progenitor cells cycle asynchronously between multiple molecular states to generate cortical plate neurons. We hypothesized that these molecular states within neuroepithelial clonal colonies may be perturbed by fetal teratogens like alcohol, and that analyses of these perturbations may yield clues about mechanisms underlying teratogenesis. Fetal mouse dorsal telencephalon was microdissected at gestational day (GD) 12.5, dispersed single cells cultured for 5 days to yield clonal neurosphere cell aggregates, in either defined control culture media, or with a dose-range of ethanol. We assessed 68 gene transcripts by multiplexed RT-PCR in 264 individual neurospheres, across all treatment conditions. Cluster analysis resulted in the classification of control neurospheres into seven separate categories along a developmental trajectory from neuroepithelial, to transit-amplifying, to neuronal identity. Moreover, smaller control neurospheres were more immature than larger neurospheres. Ethanol exposure resulted in dose-related dissociation between neurosphere size and maturation state, with smaller neurospheres biased towards later maturation states. This pro-maturation effect was particularly pronounced at the highest doses of ethanol. These data suggest that ethanol facilitates neuroepithelial maturation with concurrent loss of stem cells, which may contribute to diminished brain growth.
2026-02-02 | GSE167604 | GEO
Project description: Not available
| S-EPMC8784167 | biostudies-literature
Project description:Expression data from Ankrd11Yod/+ and WT embryonic cortical neurospheres
| PRJNA267240 | ENA
Project description:Timed pregnant C57Bl6 mice were exposed to ethanol during a critical period, gestational day 15 to 18, of cerebral cortical development to identify gene expression changes in the cerebral cortex of developing fetus due to this ethanol exposure Keywords: Compared animals exposed to ethanol (alcohol fed group) to a pair-fed control group and both groups were normalized to a control group (animals fed adlibitum)
2006-10-31 | GSE5186 | GEO
Project description:E14.5 mouse cortical neurospheres in response to Fezf2 over-expression
| PRJNA243346 | ENA
Project description:Purpose: The goal of this study to use ethanol-exposed human embryonic stem cell (hESC)-derived neural cells as models to investigate microRNA expression changes in the brains of subjects with alcohol use disorder (AUD). Methods: hESCs were differentiated into neural cells (mainly cortical interneurons), which were then cultured in media with or without ethanol (50-100 mM) for 7 days (by duplicate experiments). Total RNAs were extracted from hESC-derived neural cells (with or without ethanol exposure) for small RNA sequencing. The sequence reads were processed using the Comprehensive Analysis Pipeline for miRNA Sequencing Data (CAP-miRseq) workflow. Ethanol-induced miRNA transcriptomic changes were analyzed by the Limma-Voom method. Results: A 7-day ethanol exposure led to differential expression of six miRNAs (absolute FC>2.0 & P<0.05) in hESC-derived cortical interneurons. Three miRNAs were upregulated (>2-fold increase & P<0.05), while three other miRNAs were downregulated (> 2-fold decrease & P < 0.05) due to ethanol exposure. Conclusions: The hESC-derived neural cell model study can partially validate miRNA transcriptomic changes in postmortem brains of subjects with alcohol use disorder.
2021-10-13 | GSE181050 | GEO
Project description: Not available
| S-EPMC11335981 | biostudies-literature
Project description:PURPOSE: To provide a detailed gene expression profile of the normal postnatal mouse cornea. METHODS: Serial analysis of gene expression (SAGE) was performed on postnatal day (PN)9 and adult mouse (6 week) total corneas. The expression of selected genes was analyzed by in situ hybridization. RESULTS: A total of 64,272 PN9 and 62,206 adult tags were sequenced. Mouse corneal transcriptomes are composed of at least 19,544 and 18,509 unique mRNAs, respectively. One third of the unique tags were expressed at both stages, whereas a third was identified exclusively in PN9 or adult corneas. Three hundred thirty-four PN9 and 339 adult tags were enriched more than fivefold over other published nonocular libraries. Abundant transcripts were associated with metabolic functions, redox activities, and barrier integrity. Three members of the Ly-6/uPAR family whose functions are unknown in the cornea constitute more than 1% of the total mRNA. Aquaporin 5, epithelial membrane protein and glutathione-S-transferase (GST) omega-1, and GST alpha-4 mRNAs were preferentially expressed in distinct corneal epithelial layers, providing new markers for stratification. More than 200 tags were differentially expressed, of which 25 mediate transcription. CONCLUSIONS: In addition to providing a detailed profile of expressed genes in the PN9 and mature mouse cornea, the present SAGE data demonstrate dynamic changes in gene expression after eye opening and provide new probes for exploring corneal epithelial cell stratification, development, and function and for exploring the intricate relationship between programmed and environmentally induced gene expression in the cornea. Keywords: other
2004-01-02 | GSE887 | GEO