Arabidopsis thaliana
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA97059 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:This experiment was annotated by TAIR (http://www.arabidopsis.org). In this experiment we examined whole genome response to herbicidal levels of 2,4-D application. Arabidopsis plants (14 days) grown in vitro on MS medium in petri dishes were flooded with 1 mL stock of 2,4-D to enable root uptake. Plants were treated with 1.0 mM 2,4-D for a period of 1 hour immediately after which RNA was extracted and used for the microarray based experiments. the goal of this study was to explore the herbicidal mode of action of auxinic herbicide 2,4-D. Experimenter name = Chitra Raghavan; Experimenter department = Trevor Stevenson Laboratory; Experimenter institute = IRRI; Experimenter address = Entomology and Plant Pathology Division IRRI; Experimenter zip/postal_code = Manila 4031; Experimenter country = Philippines Experiment Overall Design: 3 samples were used in this experiment
2008-06-14 | E-GEOD-5743 | biostudies-arrayexpress
Project description:This experiment was annotated by TAIR (http://www.arabidopsis.org). In this experiment we examined whole genome response to herbicidal levels of 2,4-D application. Arabidopsis plants (14 days) grown in vitro on MS medium in petri dishes were flooded with 1 mL stock of 2,4-D to enable root uptake. Plants were treated with 1.0 mM 2,4-D for a period of 1 hour immediately after which RNA was extracted and used for the microarray based experiments. the goal of this study was to explore the herbicidal mode of action of auxinic herbicide 2,4-D. Experimenter name = Chitra Raghavan Experimenter department = Trevor Stevenson Laboratory Experimenter institute = IRRI Experimenter address = Entomology and Plant Pathology Division IRRI Experimenter zip/postal_code = Manila 4031 Experimenter country = Philippines Keywords: compound_treatment_design
2007-01-08 | GSE5743 | GEO
Project description:Here we present the transcriptomic profile of mutant plants designated as ceh1 (constitutively expressing HPL). CEH1 encodes 1-hydroxy-2-methyl-2-butenyl 4-diphosphate synthase (HDS), the enzyme controlling the bottleneck step of the biosynthesis of isopentenyl diphosphate via the 2-C-methyl-d-erythritol-4-phosphate (MEP) pathway in the plastids. Mutation of this enzyme in ceh1 mutant led to accumulation of high levels of the stress specific signaling metabolite 2c-methyl-D-erythritol 2,4-cylclodiphosphate (MEcPP), and consequently constitutive activation of a selected otherwise stress responsive genes. This data identifies the ensemble of stress responsive genes whose expression is regulated by the MEcPP signaling cascade.
2014-09-24 | GSE61675 | GEO
Project description:Physiological and transcriptomic analysis reveals the herbicidal effect of ailanthone in Arabidopsis thaliana
| PRJNA870106 | ENA
Project description:Here we present the proteomic profile of mutant plants designated as eds16 (enhanced disease susceptibility), ceh1 (constitutively expressing HPL) as well as the ceh1 eds16 double mutant. CEH1 encodes 1-hydroxy-2-methyl-2-butenyl 4-diphosphate synthase (HDS), the enzyme controlling the bottleneck step of the biosynthesis of isopentenyl diphosphate via the 2-C-methyl-d-erythritol-4-phosphate (MEP) pathway in the plastids. Mutation of this enzyme in ceh1 mutant led to accumulation of high levels of the stress specific signaling metabolite 2c-methyl-D-erythritol 2,4-cylclodiphosphate (MEcPP), and consequently constitutive activation of a selected otherwise stress responsive genes. This data identifies the ensemble of stress responsive genes whose expression is regulated by the MEcPP signaling cascade.
| MSV000078868 | MassIVE
Project description:Whole genome expression in Arabidopsis (CBX9)
| PRJDB19979 | ENA
Project description:Root transcriptome remodeling of Arabidopsis in response to high levels of magnesium sulfate
| PRJNA124239 | ENA
Project description:Time-course expression analysis of the low pH (pH 4.6) response in Arabidopsis whole roots
| PRJNA155177 | ENA
Project description:Here we present the transcriptomic profile of mutant plants designated as ceh1 (constitutively expressing HPL). CEH1 encodes 1-hydroxy-2-methyl-2-butenyl 4-diphosphate synthase (HDS), the enzyme controlling the bottleneck step of the biosynthesis of isopentenyl diphosphate via the 2-C-methyl-d-erythritol-4-phosphate (MEP) pathway in the plastids. Mutation of this enzyme in ceh1 mutant led to accumulation of high levels of the stress specific signaling metabolite 2c-methyl-D-erythritol 2,4-cylclodiphosphate (MEcPP), and consequently constitutive activation of a selected otherwise stress responsive genes. This data identifies the ensemble of stress responsive genes whose expression is regulated by the MEcPP signaling cascade. About 20 two-week-old plants grown on 1/2 MS medium were collected to extract total RNA. Transcriptome of parent line and ceh1 mutant were compared.
2014-09-24 | E-GEOD-61675 | biostudies-arrayexpress
Project description:Plant responses to abiotic stresses are accompanied by massive changes in transcriptome composition. To provide a comprehensive view of stress-induced changes in the Arabidopsis thaliana transcriptome, we have used whole-genome tiling arrays to analyze the effects of salt, osmotic, cold and heat stress as well as application of the hormone abscisic acid (ABA), an important mediator of stress responses.
2008-11-14 | GSE13584 | GEO