Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human Gut Metagenome

ABSTRACT: Human gut metagenome of ulcerative colitis and healthy stool samples from Northern India

PROVIDER: PRJNA983946 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24925831_1.fastq.gz	Fastqsanger.gz
	SRR24925831_2.fastq.gz	Fastqsanger.gz
	SRR24925832_1.fastq.gz	Fastqsanger.gz
	SRR24925832_2.fastq.gz	Fastqsanger.gz
	SRR24925833_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 82

Similar Datasets

E-PROT-40

Project description:Human colon biopsies (healthy and Ulcerative Colitis) LC-MS/MS

2022-01-07 | E-PROT-40 | ExpressionAtlas

Study on analysis of gut bacteria and their by products from stool samples

Project description:Intervention1: NIL: NIL Control Intervention1: NIL: NIL Primary outcome(s): 1). Comparative difference in gut microbial signatures in healthy individuals, colorectal (CRC) and ulcerative colitis (UC) patients using BugSpeaks microbiome analytical platform 2). Comparative difference in stool metabolites in healthy individuals, CRC and UC patients Timepoint: Screening Visit (Up to day 3) Baseline Visit- Day 0

| 2721938 | ecrin-mdr-crc

E-GEOD-23597

Project description:Expression data from colonic biopsy samples of infliximab treated ulcerative colitis patients

2025-01-24 | E-GEOD-23597 | ExpressionAtlas

E-GEOD-12251

Project description:Transcription profiling by array of human ulcerative colitis samples with varying responses to infliximab

2025-01-16 | E-GEOD-12251 | ExpressionAtlas

Ulcerative_Colitis_Human_Gut_Microbiome

Project description:Exploration of human distal gut microbiome proteins from ulcerative colitis and healthy volunteers

2021-06-04 | PXD022433 | Pride

E-GEOD-65114

Project description:Microarray analysis of colonic mucosal biopsies from healthy controls and patients with active ulcerative colitis

2025-01-24 | E-GEOD-65114 | ExpressionAtlas

Genentech IBD Fecal Proteomics

Project description:Comparison of the human fecal proteomes from healthy control (HC), ulcerative colitis (UC), and Crohn's disease (CD) stool. Two cohorts: Cohort 1 with N=5 samples from each group (HC, UC, CD) and Cohort 2 with N=20 samples from HC, and N=10 samples each from UC and CD.

2022-04-11 | MSV000089237 | MassIVE

Altered fecal small RNA profiles in colorectal cancer reflect gut microbiome composition in stool samples

Project description:Dysbiotic configurations of the human gut microbiota have been linked with colorectal cancer (CRC). Human small non-coding RNAs are also implicated in CRC and recent findings suggest that their release in the gut lumen contributes to shape the gut microbiota. Bacterial small RNAs (bsRNAs) may also play a role in carcinogenesis but their role is less explored. Here, we performed small RNA and shotgun sequencing on 80 stool specimens of patients with CRC, or adenomas, and healthy subjects collected in a cross-sectional study to evaluate their combined use as a predictive tool for disease detection. We reported a considerable overlap and correlation between metagenomic and bsRNA quantitative taxonomic profiles obtained from the two approaches. Furthermore, we identified a combined predictive signature composed by 32 features from human and microbial small RNAs and DNA-based microbiome able to accurately classify CRC from healthy and adenoma samples (AUC= 0.87). In summary we reported evidence that host-microbiome dysbiosis in CRC can be observed also by altered small RNA stool profiles. Integrated analyses of the microbiome and small RNAs in the human stool may provide insights for designing more accurate tools for diagnostic purposes.

2019-08-30 | GSE132236 | GEO

Deep gut metaproteomics - A deep metaproteomics approach for the study of human microbiomes

Project description:Stool samples were collected from 4 children and subjected to deep gut metaproteomics analysis for in-depth understanding the functional compositions of human gut mcirobiome.

2017-08-10 | PXD005619 | Pride

Mouse gut metaproteome - MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota

Project description:The mouse stool samples were collected from different diets fed mice and bacterial cells were harvest for metaproteomic analysis for understanding the role ofdiet on gut microbiota.

2016-07-05 | PXD003527 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data