aspergillus - OmicsDI

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Unknown (8120)
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Organisms

Aspergillus fumigatus (151)
Aspergillus nidulans (122)
Aspergillus niger (121)
Homo sapiens (113)
Mus musculus (81)
Aspergillus flavus (52)
Aspergillus oryzae (38)
Saccharomyces cerevisiae (36)
Aspergillus fumigatus Af293 (25)
Zea mays (20)
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Candida albicans (16)
Aspergillus oryzae RIB40 (16)
Aspergillus parasiticus (12)
Arabidopsis thaliana (9)
Aspergillus terreus (8)
Caenorhabditis elegans (8)
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Aspergillus cristatus (3)
Aspergillus clavatus (2)
Danio rerio (2)
Botrytis cinerea (2)
Fusarium verticillioides (2)
Fusarium graminearum PH-1 (1)

Organisms

Aspergillus niger (1741)
Aspergillus nidulans (367)
Aspergillus niger NRRL3 (264)
Aspergillus fumigatus (248)
Aspergillus flavus (160)
Aspergillus oryzae (62)
Aspergillus nidulans FGSC A4 (55)
Aspergillus oryzae RIB40 (44)
Homo sapiens (43)
Mus musculus (40)
Aspergillus terreus (33)
Aspergillus cristatus (25)
Aspergillus (23)
Aspergillus fumigatus Af293 (22)
Nemania diffusa (20)
Xylaria arbuscula (20)
Aspergillus parasiticus (20)
Locusta migratoria manilensis (20)
Biscogniauxia mediterranea (18)
Xylaria cubensis (16)
Xylaria scruposa (16)
Aspergillus luchuensis (16)
Aspergillus carbonarius (13)
Aspergillus sydowii (12)
Xylaria flabelliformis (12)
Aspergillus montevidensis (12)
Aspergillus tubingensis (12)
Aspergillus flavus NRRL3357 (10)
Aspergillus welwitschiae (10)
Aspergillus ochraceus (10)

Repository

ENA (5282)
geo (482)
biostudies-arrayexpress (385)
pride (153)
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Tissue

Cell culture (16)
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Mycelium (6)
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Myoblast (4)
Conidium (3)
HeLa cell (3)
Blood (2)
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Plant (1)
A549-CR cell (1)
Bronchoalveolar lavage (1)
Cell suspension culture (1)
Embryonic cell (1)
Endothelial cell of umbilical vein (1)
Extracellular vesicle (1)
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Fungus (1)
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Liver (1)
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Disease

Disease free (5)
Aspergillosis (4)
Cystic fibrosis (4)
Normal (3)
Cervix carcinoma (3)
Fungal infectious disease (2)
Chronic lung allograft dysfunction (1)
Alzheimer's disease (1)
Not Available (1)
Candidiasis (1)
Invasive aspergillosis (1)
Keratitis (1)
Myeloid leukemia (1)
Respiratory allergy (1)

Technology Type

Mass Spectrometry (154)
Shotgun proteomics (105)
Bottom-up proteomics (19)
Mass spectrometry (14)
Affinity purification coupled with mass spectrometry proteomics (11)
Mass spectrometry assay (10)
Data-dependent acquisition (9)
Gel-based experiment (8)
SWATH MS (5)
Top-down proteomics (4)
HDMSE (3)
All-ion fragmentation (2)
Data-independent acquisition (2)
NMR spectroscopy (1)
ESI (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive (11)
Illumina HiSeq 2000 (8)
6545 Q-TOF LC/MS (7)
Q Exactive Plus (6)
Illumina NovaSeq 6000 (5)
Impact II (5)
Illumina HiSeq 4000 (4)
Agilent 7890A GC with 5975C inert XL MSD (4)
Impact HD (4)
LTQ Orbitrap Velos Pro (4)
Scanning hardware (3)
MaXis (3)
MicrOTOF-Q II (3)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 1000 (2)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
DESeq2 (1)
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Geniom (1)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
AB SOLiD 4 System (1)
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Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
BGISEQ-500 (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 3000 (1)
- (1)

Publication Date

2014 (87)
2024 (86)
2010 (84)
2012 (82)
2025 (74)
2022 (70)
2013 (65)
2021 (64)
2015 (61)
2011 (57)
2020 (56)
2019 (53)
2016 (53)
2023 (51)
2026 (48)
2018 (47)
2008 (46)
2017 (39)
2009 (24)
2007 (18)
2005 (16)
2006 (7)
2003 (2)
2004 (2)

CHEBI ID

CHEBI:37671 (7)
CHEBI:57251 (1)
CHEBI:18323 (1)
CHEBI:28479 (1)
CHEBI:15642 (1)
CHEBI:53027 (1)
CHEBI:53026 (1)
CHEBI:134399 (1)
CHEBI:28179 (1)
CHEBI:28619 (1)
CHEBI:35757 (1)
CHEBI:57388 (1)
CHEBI:11812 (1)
CHEBI:11596 (1)
CHEBI:77740 (1)
CHEBI:17594 (1)
CHEBI:17164 (1)
CHEBI:74393 (1)
CHEBI:77802 (1)
CHEBI:35621 (1)
CHEBI:58680 (1)
CHEBI:74631 (1)
CHEBI:15593 (1)
CHEBI:132957 (1)
CHEBI:74604 (1)
CHEBI:32528 (1)
CHEBI:58675 (1)
CHEBI:58083 (1)
CHEBI:73784 (1)
CHEBI:73898 (1)

Metabolite Name

Guanine (5)
Adenine (5)
Hypoxanthine (5)
Benzamide (4)
Nicotinamide N-oxide (4)
Uracil (4)
DL-Tryptophan (4)
Choline (4)
Glyceric acid (4)
Pipecolic acid (4)
Riboflavin (4)
Cytidine (4)
L-Tyrosine (4)
L-Phenylalanine (4)
Octadeca-11E,13E,15Z-trienoic acid (3)
2-Phenylethylamine (3)
Cystamine (3)
D-Gluconic acid (3)
Tropolone (3)
N-Acetyl-L-leucine (3)
5-Methyluridine (3)
Methyl dihydrojasmonate (3)
4-Methyl-5-thiazoleethanol (3)
2,6-Dihydroxybenzoic acid (3)
Valylproline (3)
Betaine (3)
Propionylcarnitine (3)
Thymine (3)
Thiamine (3)
Spermine (3)

First Public Date

2025 (736)
2019 (709)
2018 (569)
2017 (490)
2021 (465)
2023 (456)
2020 (435)
2024 (281)
2016 (255)
2026 (253)
2022 (239)
2014 (219)
2013 (91)
2015 (82)
2012 (2)

Modelling Approach

Constraint-based model (5)
Ordinary differential equation model (1)

Lab affiliation

Beckman Research Institute of City of Hope (3)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (3)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (3)
1Department of Biology, National and Kapodistrian University of Athens, Panepistimioupolis, Athens, 15784, Greece. 2Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Heraklion, 70013, Greece. (2)
Applied Proteomics Lab, Department of Biology, Maynooth University, Ireland. (2)
College of Biological Engineering, Henan University of Technology, Zhengzhou, China (2)
Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland (2)
Henan University of Technology (2)
IGBB, Mississippi State University (2)
Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (2)
Laboratory of Enzymology and Molecular Biology (LEBIMO), Institute of Biology, University of Campinas (UNICAMP) (2)
Maynooth University (2)
Medical Mycology Laboratory, Department of Biology, Maynooth University (2)
Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology / Hans Knöll Institute Jena (Leibniz-HKI), Jena, Germany (2)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
Wageningen University (2)
Waters Corporation (2)
1) Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology – Hans Knöll Institute, Jena, Germany 2) Department of Microbiology and Molecular Biology, Friedrich Schiller University, Jena, Germany (1)
1CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands (1)
Analytical Biochemistry and Proteomics Unit, IIBCE & Institut Pasteur de Montevideo (1)
Applied Proteomics Lab, Department of Biology, Maynooth University, Co. Kildare, Ireland (1)
Aravind Medical Research Foundation, Madurai, India (1)
Assitant Professor, Jaypee University of Information and Technology (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
Bijoya Karmakar, Division of Plant Biology, Bose Institute, Kolkata, India. Swati Gupta Bhattacharya, Professor, Division of Plant Biology Bose Institute 93/1 Acharya Prafulla Chandra Road, Kolkata 700009 (1)
Bio-organic chemistry, LIC, Leiden University, Einsteinweg 55, 2333CC, Leiden, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, and Netherlands Proteomics Centre, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, the Netherlands (1)
CAS Center for Excellence in Molecular Plant Science(CEMPS)/Institute of Plant Physiology and Ecology, Chinese Academy of Sciences (CAS) (1)

IsPrivate

False (12)

Model Flag

Non Kinetic (9)

Submitter Keywords

Not Peer Reviewed (1)

Classification

fungi (4181)

Modification

15.994915 (2)
Not available (2)
57.021464 (1)
N6 (1)

Study type

Transcription profiling by array (241)
RNA-seq of coding RNA (79)
Unknown experiment type (15)
Other (12)
RNA-seq of non coding RNA (7)
ChIP-seq (6)
Comparative genomic hybridization by array (5)
ChIP-chip by array (4)
ChIP-chip by tiling array (3)
High-throughput sequencing (2)
Transcription profiling by tiling array (2)
CLIP-seq (2)
DNA-seq (2)
CLIP-Seq (1)
Cell line - High-throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (875)
2023 (818)
2021 (798)
2025 (709)
2024 (689)
2020 (685)
2018 (502)
2019 (498)
2017 (394)
2016 (370)
2015 (330)
2014 (293)
2013 (246)
2012 (227)
2010 (177)
2011 (164)
2008 (125)
2009 (106)
2026 (104)
2007 (70)
2005 (68)
2006 (60)
2004 (37)
2003 (31)
1998 (30)
1999 (27)
2002 (26)
2001 (26)
2000 (17)
1997 (1)

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Unveiling molecular changes in guabiju during Aspergillus brasiliensis cultivation: insights from untargeted metabolomics

Black aspergilli exhibit remarkable bioconversion potential by transforming plant matrices into bioactive compounds, although their metabolic processes remain underexplored. This study investigated the biotransformation of metabolites during the solid-state cultivation of guabiju (Myrcianthes...

2025-08-08 | MTBLS12436 | MetaboLights

Aftpo3 and Afdur3, the Aspergillus fumigatus Plasma Membrane Transporters of Polyamines, Regulate Polyamine Homeostasis and Itraconazole Susceptibility

Aspergillus fumigatus is a notorious opportunistic pathogen that causes Invasive Aspergillosis (IA) infections with high mortality in immunosuppressed individuals. Long-term antifungal drug azole abuse in clinical treatment and agriculture renders it ineffectual or drug resistant. Drug resistance...

2020-12-21 | MTBLS1739 | MetaboLights

Deletion of Gliotoxin Biosynthesis Remodels the Intra- and Extracellular Metabolic Status of Aspergillus fumigatus, Alters Its Virulence-Related Phenotypes, and Modulates Host Immune Responses_Mycelium

Gliotoxin is a secondary metabolite produced by Aspergillus fumigatus, known to play a significant role in immune regulation and virulence phenotypes. This study investigates how the deletion of gliotoxin biosynthesis remodels the metabolic state of A. fumigatus and subsequently af...

2026-05-11 | MTBLS14012 | MetaboLights

2026-05-11 | MTBLS14011 | MetaboLights

The murine lung microbiome is dysbalanced by the human pathogenic fungus Aspergillus fumigatus resulting in enrichment of anaerobic bacteria

Here, we report significant changes in the composition of the lung microbiome and metabolome of mice under immune suppression, infection of immunosuppressed mice with virulent and avirulent strains of the clinically important human-pathogenic fungus Aspergillus fumigatus, and treatment with the clin...

2025-07-04 | MTBLS12262 | MetaboLights

The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger

Fungi are an important source of enzymes for saccharification of plant polysaccharides and production of biofuels. Understanding of the regulation and induction of expression of genes encoding these enzymes is still incomplete. To explore the induction mechanism, we analysed the response of the indu...

ORGANISM(S): Aspergillus niger

2014-08-22 | E-GEOD-57315 | biostudies-arrayexpress

Transcriptome of Aspergillus oryzae following ER stress

The Aspergillus oryzae, an important filamentous fungus used in food fermentation and enzyme industry, has been revealed to own prominent features in its genomic compositions by genome sequencing and various other tools. However, the functional complexity of the A. oryzae transcriptome has not yet b...

ORGANISM(S): Aspergillus oryzae

2010-02-02 | E-GEOD-18851 | biostudies-arrayexpress

Effect of amphotericin B on Aspergillus fumigatus

Amphotericin B (AMB) is the most widely used polyene antifungal drug for the treatment of systemic fungal infections including invasive aspergillosis. We aimed to understand molecular targets of AMB in Aspergillus fumigatus (Afu) by genomic approaches. Amphotericin B (AMB) is the most widely used p...

ORGANISM(S): Aspergillus fumigatus

2010-05-26 | E-GEOD-10505 | biostudies-arrayexpress

Comparative genomic hybridization of Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae and Neosartorya fischeri with Aspergillus fumigatus Af293

Genomic DNA from five strains, Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae, and Neosartorya fischeri, were co-hybridized with that of Aspergillus fumigatus Af293 and compared.

ORGANISM(S): Neosartorya fischeri

2005-05-15 | E-MEXP-333 | biostudies-arrayexpress

A tri-species Aspergillus array

This SuperSeries is composed of the following subset Series: GSE9275: A tri-species Aspergillus array (nidulans arrays) GSE9276: A tri-species Aspergillus array (niger arrays) GSE9277: A tri-species Aspergillus array (oryzae arrays) Keywords: SuperSeries Refer to individual Series

ORGANISM(S): Aspergillus oryzae

2008-02-10 | E-GEOD-9298 | biostudies-arrayexpress

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