butanol metabolism

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Unknown (143)
Transcriptomics (28)
Metabolomics (17)
Genomics (10)
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Models (4)

Organisms

Clostridium acetobutylicum (8)
Aerococcus urinae NBRC 15544 = CCUG 36881 (6)
Allexis (6)
Apostichopus japonicus (6)
Canis lupus familiaris (6)
Carya cathayensis (6)
Clostridioides difficile 630 (6)
Cyanophora paradoxa (6)
Ensifer adhaerens (6)
Enterococcus faecalis (6)
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Histomonas meleagridis (6)
Human immunodeficiency virus 1 (6)
Listeria monocytogenes (6)
Mycobacterium tuberculosis (3)
Lepeophtheirus salmonis (2)
Escherichia coli (2)
Clostridium acetobutylicum ATCC 824 (2)
Clostridium beijerinckii NCIMB 8052 (2)
Saccharomyces cerevisiae (2)
Arthrobacter sp. (2)
Allium cepa (1)
Nitrosomonas europaea (1)
Vitis vinifera (1)
Saccharomyces cerevisiae S288C (1)
Candida albicans (1)
Mus musculus (1)
Homo sapiens (1)
Clostridium acetobutylicum DSM 1731 (1)
Rattus norvegicus (1)

Organisms

Clostridium acetobutylicum (3)
Clostridium beijerinckii NCIMB 8052 (1)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (23)
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ENA (9)
geo (6)
pride (6)
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Tissue

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Macrophage (1)
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Disease

Melanoma (1)

Technology Type

Mass Spectrometry (11)
Mass spectrometry (9)
ESI (4)
Shotgun proteomics (4)
Mass spectrometry assay (3)
Bottom-up proteomics (2)
EI (1)
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SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
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MS Imaging - positive - - Cryogenic OrbiSIMS TOF Image (1)
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MS Imaging - positive - - Cryogenic OrbiSIMS (1)
MS Imaging - negative - - Cryogenic OrbiSIMS (Negative) (1)
MS Imaging - positive - - Cryogenic OrbiSIMS (Positive) (1)
MS Imaging - positive - - Cryogenic ToF-SIMS (1)
Direct infusion MS - negative (1)
Xevo G2 QTOF (Waters) (1)
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API 5500 QTRAP (AB Sciex) (1)
LTQ Orbitrap Classic (Thermo Scientific) (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)

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2016 (3)
2012 (3)
2011 (3)
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2009 (2)
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2010 (1)
2014 (1)
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2020 (1)

CHEBI ID

CHEBI:16680 (3)
CHEBI:16856 (3)
CHEBI:17562 (3)
CHEBI:28300 (3)
CHEBI:25094 (3)
CHEBI:17822 (3)
CHEBI:16704 (3)
CHEBI:15756 (3)
CHEBI:16695 (3)
CHEBI:17568 (3)
CHEBI:75646 (2)
CHEBI:134237 (2)
CHEBI:136382 (2)
CHEBI:18222 (2)
CHEBI:16192 (2)
CHEBI:85743 (2)
CHEBI:85736 (2)
CHEBI:90302 (2)
CHEBI:84662 (2)
CHEBI:84665 (2)
CHEBI:85874 (2)
CHEBI:85726 (2)
CHEBI:85870 (2)
CHEBI:136245 (2)
CHEBI:66859 (2)
CHEBI:66857 (2)
CHEBI:64517 (2)
CHEBI:66849 (2)
CHEBI:66850 (2)
CHEBI:64561 (2)

Metabolite Name

LPE 20:4 (2)
LPE 16:0 (2)
LPC 22:6 (2)
LPC 18:1 (2)
N-Acetylglutamine (2)
LPI 18:0 (2)
LPE 22:6 (2)
LPC 20:4 (2)
LPC 16:0 (2)
LPE 18:0 (2)
LPE 18:1 (2)
LPI 16:0 (2)
Taurine (2)
Hypoxanthine (2)
Inosine (2)
Glutathione (2)
Riboflavin (2)
Asparagine (2)
Isoleucine (2)
Tryptophan (2)
Arginine (2)
Creatine (2)
ST 24:1;O3;S (1)
SMGDG O-37:2|SMGDG O-19:0_18:2 (1)
SMGDG 37:3 (1)
SM 42:2;O2|SM 18:1;O2/24:1 (1)
SM 36:2;O2(d9)|SM 18:1;O2/18:1(d9) (1)
SM 35:1;O2|SM 16:0;O2/19:1 (1)
SM 34:0;O2|SM 18:0;O2/16:0 (1)
SM 32:2;O2|SM 22:2;O2/10:0 (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2022 (2)
2015 (2)
2014 (2)
2026 (1)
2024 (1)
2017 (1)

Classification

bacteria (4)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA (6)
Transcription profiling by tiling array (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2020 (17)
2021 (16)
2015 (16)
2023 (14)
2016 (12)
2022 (12)
2024 (11)
2019 (10)
2018 (9)
2017 (8)
2010 (7)
2013 (5)
2011 (5)
2025 (5)
2026 (4)
2012 (4)
2009 (3)
2007 (3)
2014 (2)
2008 (2)
2002 (1)

Lab affiliation

CEA-Marcoule, DSV-Li2D, 30207 Bagnols-sur-Cèze, France (2)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg,CNRS, IPHC UMR 7178, 67087 Strasbourg,France (1)
Proteomics and Metabolomics Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO), Italy (1)
The University of Texas at Austin (1)
Wageningen University (1)

Tags

pathogen (4)
pathogen:bacterium (4)
xref:PubMed:26621081 (2)
xref:PubMed:22846451 (1)
xref:PubMed:27966599 (1)
xref:PubMed:21206489 (1)

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Genomic Library Enrichment for n-Butanol tolerance in E. coli. Samples vs Reference

Genomic Library Enrichment to determine the n-Butanol Tolerant related genes in E. coli. The samples involves a series of batch transfers to increasing concentrations of n-butanol and controls (always grew in absence of the solvent) Two technical replicas. Samples 1, 3, 5, and 7 are the serial tra...

ORGANISM(S): Escherichia coli

2012-09-19 | E-GEOD-26223 | biostudies-arrayexpress

CcpA, a Pleiotropic Key Regulator in Butanol-producing Clostridium acetobutylicum ATCC 824

Clostridium acetobutylicum is a typical bacterium of major importance to industrial butanol production. In order to dissect the regulatory network pertaining to the industrial application of this bacterium, catabolite control protein A (CcpA) was investigated for its global function by DNA microarra...

ORGANISM(S): Clostridium acetobutylicum

2012-08-30 | E-GEOD-33364 | biostudies-arrayexpress

Proteomics of Pseudomonas putida BIRD-1

Understanding Butanol Tolerance and Assimilation in Pseudomonas putida BIRD-1, analysis of soluble proteins

ORGANISM(S): Pseudomonas putida (strain BIRD-1)

2018-10-24 | PXD002679 | Pride

Identification of isobutanol response network of E. coli

Isobutanol has emerged as a potential biofuel due to recent metabolic engineering efforts. Here we used gene expression and transcription factor(TF)-gene interaction data, genetic knockouts, and Network Component Analysis (NCA) to map the isobutanol response network of Escherichia coli under aerobic...

ORGANISM(S): Escherichia coli

2009-10-31 | E-GEOD-13444 | biostudies-arrayexpress

Proteomics of Pseudomonas putida BIRD-1

Understanding Butanol Tolerance and Assimilation in Pseudomonas putida BIRD-1, analysis of proteins associated to membranes

ORGANISM(S): Pseudomonas putida (strain BIRD-1)

2018-10-24 | PXD002655 | Pride

Shotgun proteomics butanol tolerance butanol metabolism ms/ms

Milne2011 - Genome-scale metabolic network of Clostridium beijerinckii (iCB925)

Milne2011 - Genome-scale metabolic network of Clostridium beijerinckii (iCB925) This model is described in the article: Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. Milne CB, Eddy JA, Raju R, Ardekani ...

2015-07-30 | MODEL1507180034 | BioModels

CcpA, a Pleiotropic Key Regulator in Butanol-producing Clostridium acetobutylicum ATCC 824

ORGANISM(S): Clostridium acetobutylicum

2012-08-30 | GSE33364 | GEO

The sulfur metabolism during Acetogenesis and Solventogenesis of Clostridium acetobutylicum

The batch fermentation of Clostridium acetobutylicum is characterized by an acetogenic growth phase during exponential growth when mainly acetate and butyrate are fermentation products. Then, at the end of exponential growth and during stationary phase, the organism switches to solventogenic growth ...

ORGANISM(S): Clostridium acetobutylicum ATCC 824

2015-04-15 | E-MTAB-2745 | biostudies-arrayexpress

Synergy at work: linking the metabolism of two lactic acid bacteria to achieve superior production of 2-butanol.

Not available

S-EPMC7065357 | biostudies-literature

The putative ceramide-conjugation protein Cwh43 regulates G0 quiescence, nutrient metabolism and lipid homeostasis in fission yeast (Lipidome assay)

Cellular nutrient states control whether cells proliferate, or whether they enter or exit quiescence. Here, we report characterizations of fission yeast temperature-sensitive (ts) mutants of the evolutionarily conserved transmembrane protein, Cwh43, and explore its relevance to utilization of glucos...

2018-08-21 | MTBLS578 | MetaboLights

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