cilium - OmicsDI

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Unknown (1483)
Transcriptomics (327)
Genomics (248)
Proteomics (94)
Metabolomics (8)
Other (2)
Methylation profiling (1)

Organisms

Homo sapiens (179)
Mus musculus (121)
Drosophila melanogaster (58)
Arabidopsis thaliana (19)
Danio rerio (9)
Caenorhabditis elegans (7)
Bos taurus (7)
Xenopus laevis (6)
Synechocystis sp. PCC 6803 (5)
Escherichia coli (4)
Gossypium hirsutum (3)
Helicobacter pylori (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Nostoc sp. PCC 7120 = FACHB-418 (2)
Salmonella enterica (2)
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Shewanella oneidensis MR-1 (1)
Cucumis sativus (1)

Organisms

Mus musculus (57)
Homo sapiens (46)
Spodoptera cilium (4)
Danio rerio (3)
Xenopus laevis (2)
Canis lupus familiaris (2)
Bos taurus (2)
Caenorhabditis elegans (1)
Plasmodium falciparum (1)

Repository

biostudies-arrayexpress (282)
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geo (114)
pride (45)
EGA (39)
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iProX (9)
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jPOST (5)
GNPS (2)
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PanoramaPublic (1)

Tissue

Epithelial cell (11)
Cell culture (10)
Kidney (6)
Retina (3)
Brain (2)
Permanent cell line cell (2)
Photoreceptor layer of retina (2)
Cell suspension culture (1)
Ciliary body (1)
Ciliary processes (1)
Cilium (1)
Embryonic kidney cell line (1)
Embryonic stem cell (1)
Epithelium (1)
Eye (1)
Layer of hippocampus (1)
Layer of retina (1)
Neural progenitor cell (1)
Olfactory receptor neuron (1)
Renal cortical epithelial cell (1)
Retinal rod (1)
Spermatozoon (1)
Testis (1)

Disease

Disease free (4)
Breast cancer (2)
Ciliopathy (2)
Non-CF (1)
H9N2 infected (1)
Not Available (1)
Alzheimer's disease (1)
Autosomal recessive polycystic kidney disease (1)
Chronic bronchitis (1)
Developmental and epileptic encephalopathy 2 (1)
Glioblastoma (1)
Mixed disorder as reaction to stress (1)
Neurodevelopmental abnormality (1)
Retinal degeneration (1)
Retinal disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (12)
Bottom-up proteomics (11)
Data-dependent acquisition (6)
Mass spectrometry (4)
Gel-based experiment (4)
Illumina HiSeq 2000 (2)
Mass spectrometry assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500 (1)
Data-independent acquisition (1)
DiaPASEF (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (10)
Illumina NovaSeq 6000 (10)
NextSeq 500 (8)
Illumina HiSeq 2000 (5)
Nanostring GeoMx spatial profiler (2)
Illumina HiSeq (2)
Illumina Genome Analyzer IIx (2)
Axon- GenePix4000B (2)
Illumina Genome Analyzer II (2)
- (2)
NextSeq 2000 (2)
Illumina HiSeq 1500 (2)
Nanostring GeoMx® spatial profiler (1)
NanoString GeoMx DSP analysis pipeline (1)
GeoMx (1)
Fragment Analyzer, Qubit assay (1)
Non (1)
Ion Chef™ System and Ion S5™ System or Ion GeneStudio™ S5 Systems. (1)
Affymetrix Gene Atlas System (1)
BAS-1800 [FUJIFILM] (1)
G2505A DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
None (1)
NA (1)
N/a (1)
Illumina (1)
Ion Torrent S5 XL (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
GC/MS Agilent MSD5977B (1)

Publication Date

2013 (77)
2026 (39)
2025 (37)
2024 (35)
2021 (29)
2022 (28)
2009 (26)
2020 (25)
2015 (24)
2014 (22)
2012 (21)
2011 (20)
2010 (20)
2023 (19)
2018 (14)
2008 (14)
2016 (12)
2019 (11)
2017 (10)
2006 (5)
2007 (4)
2005 (2)
2004 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:18012 (3)
CHEBI:25017 (3)
CHEBI:30915 (3)
CHEBI:6650 (3)
CHEBI:15741 (2)
CHEBI:16010 (2)
CHEBI:16027 (2)
CHEBI:16335 (2)
CHEBI:16449 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16811 (2)
CHEBI:17533 (2)
CHEBI:17821 (2)
CHEBI:17822 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:18257 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25094 (2)
CHEBI:26078 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)

Metabolite Name

Glycine (3)
Leucine (3)
(2R,2'S)-Isobuteine (2)
(3-Nitroamino)alanine (2)
(6S,8Z)-6-Hydroxy-3-oxotetradecenoic acid (2)
(S)C(S)S-S-Methylcysteine sulfoxide (2)
1,4'-Bipiperidine-1'-carboxylic acid (2)
1-(1-Propenylsulfinyl)propyl propyl disulfide (2)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (2)
1-Isothiocyanato-6-(methylsulfinyl)hexane (2)
1-Methylhistidine (2)
10-Nitrooleate (2)
13-epi-12-oxo Phytodienoic Acid (2)
2'-Aminoacetophenone (2)
2(R)-hydroxyicosanoic acid (2)
2,4-Dihydroxy-nitrophenol (2)
2,6,6-Trimethyl-2-cyclohexene-1,4-dione (2)
2,8-Quinolinediol (2)
2-(Methylthiomethyl)-3-phenyl-2-propenal (2)
2-Hydroxyadipic acid (2)
2-Pentylthiophene (2)
2-methylserine (2)
3,4,5-Trimethoxycinnamic acid (2)
3,4-Dihydroxybenzeneacetic acid (2)
3,7,8,15-Scirpenetetrol (2)
3-Carbamoyl-2-phenylpropionic acid (2)
3-Hydroxybutyrylcarnitine (2)
3-Pyridylacetic acid (2)
3-hydroxydecanoyl carnitine (2)
3-hydroxyisobutyrate (2)

First Public Date

2026 (31)
2025 (24)
2024 (23)
2020 (13)
2022 (10)
2018 (9)
2021 (8)
2019 (6)
2023 (5)
2014 (5)
2017 (3)
2016 (3)
2015 (2)
2013 (1)

Classification

protozoa (1)

Study type

Transcription profiling by array (137)
ChIP-seq (61)
RNA-seq of coding RNA (43)
Spatial transcriptomics by high-throughput sequencing (7)
RNA-seq of non coding RNA (5)
Unknown experiment type (4)
Transcription profiling by SAGE (3)
Animal - High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by tiling array (2)
ChIP-chip by array (2)
One-color microarray (1)
Animal - Single-cell sequencing (1)
Transcription profiling by tiling array (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2023 (152)
2022 (140)
2025 (121)
2013 (117)
2021 (116)
2020 (115)
2019 (115)
2024 (106)
2015 (95)
2018 (90)
2017 (90)
2014 (87)
2016 (81)
2012 (72)
2011 (64)
2009 (55)
2010 (50)
2008 (32)
2026 (24)
2007 (16)
2006 (11)
2005 (5)
2004 (5)
2002 (3)
2000 (1)
1998 (1)

Lab affiliation

Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany (3)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, 3584CH Utrecht, Netherlands. Netherlands Proteomics Center, 3584CH Utrecht, Netherlands. (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Center for Translational Research, Children’s National Research Institute, Children’s National Hospital, Washington,DC, United States & Children’s Hospital of Philadelphia, Philadelphia, PA, United States (1)
Cytoskeleton Research Lab Department of Molecular Biology and Genetics Koç University Turkey (1)
Department of Anatomy and Cell Biology, McGill University, Canada (1)
Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, USA. (1)
Department of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA. (1)
Department of Biological Sciences, Molecular and cellular parasitology lab, National University of Singapore,Singpapore (1)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan. (1)
Department of Cellular Biology, University of Georgia, Athens, GA 30602 (1)
Department of Neurosurgery, Experimental Neurosurgery, University Hospital, Goethe University, Frankfurt am Main, Germany German Cancer Consortium (DKTK), Partner Site Frankfurt, Frankfurt am Main, Germany German Cancer Research Center DKFZ, Heidelberg, Germany (1)
Department of Ophthalmology and Visual Science, University of Michigan, Ann Arbor, MI, USA Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI, USA (1)
Department of Pharmacology | UW School of Medicine Institute of Stem Cell and Regenerative Medicine | University of Washington, Seattle, USA (1)
Division of Neonatology, Department of Pediatrics, University of Miami Miller School of Medicine and Holtz Children’s Hospital, Jackson Health System, Miami, FL, USA. (1)
Duke University Eye Center (1)
Eberhard Karls University Tübingen, Institute for Ophthalmic Research (1)
Institut Necker Enfants Malades (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstr. 11 07745 Jena Germany (1)
Luca Lignitto, CRCM, 27 Boulevard Leï Roure, 13009, Marseille, France (1)
Marsico Lung Institute, UNC-Chapel Hill (1)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls-University Tuebingen (1)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, ZKF 1.055, Universitätsstraße 150, 44801 Bochum, Germany (1)
Microtubule Organization Group Mechanisms of Disease Programme Institute for Research in Biomedicine (IRB Barcelona) The Barcelona Institute of Science and Technology (BIST) (1)
Molecular Biology of Retinal Degenerations Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen (1)
National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic; Proteomics Core facility, Masaryk University, Brno, Czech Republic (1)
PRISM U1192 Universite de Lille FRANCE (1)
Professor of Cell Biology and Parasitology Division of Biological Chemistry and Drug Discovery School of Life Sciences University of Dundee DUNDEE DD1 5EH UK (1)
Program in Molecular Medicine UMass Chan Medical School Worcester MA 01605 USA (1)
Proteomic Facility, Institut Jacques Monod, UMR7592 (CNRS and Paris University) (1)

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TMT analysis of flagellum skeletons from MIP knockdown parasites

TMT data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'

ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691)

2022-11-07 | MSV000090661 | MassIVE

Kinase activity of DYRK family members is required for regulating primary cilium length, stability and morphology

The dual-specificity tyrosine-phoshorylation-regulated kinase (DYRK) family are multifunctional enzymes crucial for diverse cellular processes, including signaling through the primary cilium. Their dysregulation has been implicated in various cancers and developmental disorders, highlighting the nee...

ORGANISM(S): Homo sapiens (Human)

2025-06-10 | PXD064683 | Pride

Glucagon secretion requires IDE cilium axis

Hyglucagonemia is a hallmark of diabetes caused by dysregulation of glucagon secretion by pancreatic alpha-cells. Although glucose sensing and insulin signaling are well-established regulators, the pathways governing glucagon secretion are not fully understood. Recent evidences suggest that insulin-...

ORGANISM(S): Mus musculus (Mouse)

2026-03-23 | PXD065342 | Pride

Insulin-degrading enzyme-primary cilium axis Glucagon

APEX2 proximity proteomics of microtubule inner proteins FAP45 and FAP52

APEX2-based proximity proteomics data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'

ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691)

2022-11-07 | MSV000090660 | MassIVE

ilSpoCili

Spodoptera cilium

PRJEB109183 | ENA

Cilium induction triggers differentiation of glioma stem cells

PRJNA743803 | ENA

ilSpoCili

Spodoptera cilium, genomic and transcriptomic data

PRJEB109182 | ENA

ilSpoCili1 hap1

Spodoptera cilium genome assembly, ilSpoCili1 haplotype 1

PRJEB112386 | ENA

ilSpoCili1 hap2

Spodoptera cilium genome assembly, ilSpoCili1 haplotype 2

PRJEB112387 | ENA

Extensive structural rearrangement of intraflagellar transport trains underpins bidirectional cargo transport

Bidirectional transport in cilia is carried out by polymers of the IFTA and IFTB protein complexes, referred to as anterograde and retrograde IFT “trains”. Anterograde trains deliver cargoes from the cell to the ciliary tip, then remodel into retrograde trains for cargo export. We set out to underst...

ORGANISM(S): Chlamydomonas Reinhardtii

2024-08-21 | PXD049195 | JPOST Repository

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2164 Results

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