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TranscriptomicsDe novo characterization of foliar transcriptome in Chenopodium amaranticolor and analysis of the differentially expressed genes during the stage of hypersensative response induced by distinct plant viruses
The hypersensitive response (HR) system of Chenopodium spp. confers broad-spectrum virus resistance. However, scant knowledge exists at the genomic level for Chenopodium, thus impeding the advanced molecular research of this attractive feature. Hence we took advantage of RNA-seq to survey the foliar...
ORGANISM(S): Chenopodium amaranticolor 
2013-02-20 | E-GEOD-38451 | biostudies-arrayexpress
TranscriptomicsTranscript profiles of the flowering period Panax ginseng C.A. Meyer root and analysis the gene function
Panax ginseng C.A. Meyer is one of the most popular medicinal herbs. In order to research the genes that related to the flowering period of ginseng, and find out the antifungal proteins and transcription factors that combat various biotic and abiotic stress, a cDNA sample was prepared from the flowe...
ORGANISM(S): Panax ginseng 
2014-07-25 | E-MTAB-1239 | biostudies-arrayexpress
UnknownThe PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.
Not available
S-EPMC1189080 | biostudies-literature
TranscriptomicsTranscriptome Sequencing and Assembly of Canna indica Flower
Canna indica L. is an ornamental plant with petaloid staminodes and only a half fertile stamen in its flowers. The genetic basis for petaloid androecium remains unclear. In order to get comprehensive transcriptome data for further studies, RNA-Seq analysis were carried out. Two libraries from flower...
ORGANISM(S): Canna indica 
2016-09-01 | E-GEOD-72440 | biostudies-arrayexpress
UnknownComparative Genome Analysis Reveals Natural Variations in the Genomes of Erwinia pyrifoliae, a Black Shoot Blight Pathogen in Apple and Pear.
Not available
S-EPMC7542023 | biostudies-literature
ProteomicsProteome of E.coli BW25113 (wt and delta-argR) and LY177 across growth conditions
Motivated to understand what causes the diffusion coefficient of a 40 nm particle in E.coli to vary across experimental conditions, we performed the quantification of this bacterium's proteome in those conditions. Specifically, we analyzed the BW25113 and BW25113_delta-argR strains (Baba et al 2006)...
ORGANISM(S): Escherichia coli 
2026-04-02 | PXD064526 | Pride
E.coli  growth conditions  cog-e proteins 
TranscriptomicsPleiotropic roles of Msi1-like protein, Msl1, in growth, differentiation, stress response, and virulence of Cryptococcus neoformans
WD40 motif-containing Msi1-like (MSIL) proteins play pleiotropic cellular functions as a negative regulator of the Ras/cAMP-pathways and a component of chromatin assembly factor-I (CAF-I), and yet have not been studied in fungal pathogens. Here we identified and characterized an MSIL protein, Msl1, ...
ORGANISM(S): Cryptococcus neoformans var. grubii H99 
2012-08-23 | E-GEOD-40303 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiles of sousa chinensis leucocyte
de novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome for functional genomic analysis
ORGANISM(S): Sousa chinensis 
2013-08-30 | E-MTAB-1748 | biostudies-arrayexpress
UnknownImpact of aspirin on the transcriptome of Streptococcus pneumoniae D39.
Not available
S-EPMC5338716 | biostudies-literature
TranscriptomicsCharacterization of Pythium transcriptome and gene expression analysis for different fermentation stage
We performed transcriptome assembly and gene expression analysis using short-read sequencing technology combined with a tag-based digital gene expression (DGE) system. The results generated a total number of 13,288,892 reads (accumulated length of 1,196,000,280 nt), 169,579 contings and 23,796 unige...
ORGANISM(S): Globisporangium splendens 
2014-12-30 | GSE43320 | GEO
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