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Unknown (22135)
Transcriptomics (12990)
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Organisms

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Arabidopsis thaliana (645)
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Caenorhabditis elegans (345)
Rattus norvegicus (297)
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Escherichia coli str. K-12 substr. MG1655 (31)
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Organisms

Homo sapiens (732)
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human gut metagenome (3)
unidentified (2)
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Caenorhabditis elegans (2)
macacine betaherpesvirus 3 (1)
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Palyam virus (1)
atypical porcine pestivirus (1)
Nosema bombycis (1)
Babesia microti (1)
Craseomys rufocanus (1)
Ciona robusta (1)
Bos indicus (1)
Xenopus tropicalis (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (13753)
ENA (1752)
geo (1163)
EGA (789)
MassIVE (305)
pride (190)
MetaboLights (180)
jPOST (102)
dbGaP (88)
PeptideAtlas (80)
iProX (49)
EVA (25)
PanoramaPublic (18)
PAXDB (5)
ExpressionAtlas (4)
FAIRDOMHub (4)
BioModels (3)
Cell Collective (3)
GNPS (3)
GPMDB (3)
LINCS (3)
NODE (1)

Tissue

Others (24)
Heart (15)
Digestive System (11)
Liver (8)
Kidney (6)
Heart (6)
Male Reproductive System (6)
Blood (5)
Placenta (4)
Heart tube (1)
Not applicable (1)
Left ventricle (1)
Right ventricle (1)
Renal pelvis (1)
Left renal cortex (1)
Small intestine (1)
Right renal pelvis (1)
Muscle of arm (1)
Right renal cortex (1)
Muscle of leg (1)
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Left kidney (1)
Skeletal muscle of trunk (1)
Thymus (1)
Large intestine (1)
Spinal cord (1)
Embryo (1)
Stomach (1)
Cortex of kidney (1)
Adrenal gland (1)

Disease

Normal (104)
Breast cancer (11)
Prostate cancer (8)
Reference (6)
Osteosarcoma (5)
Severe congenital neutropenia (4)
Glioblastoma multiforme (4)
Chronic lymphocytic leukemia (4)
Adenocarcinoma (4)
Breast carcinoma (4)
Acute myeloid leukemia (4)
Neuroblastoma (4)
Rheumatoid arthritis (3)
Osteosarcoma (3)
Chronic myeloid leukemia (3)
Tumor (3)
Glioblastoma (3)
Hepatocellular carcinoma (3)
Ovarian cancer (3)
Wilms tumour (3)
Mitochondrial complex I deficiency (2)
Infiltrating ductal carcinoma (2)
Breast adenocarcinoma (2)
Porphyria NOS (2)
Colon cancer (2)
Not infected (2)
Chronic myelogenous leukemia (2)
Murine hereditary hemochromatosis (2)
Myeloid leukemia (1)
Andersen-Tawil syndrome (1)

Technology Type

Illumina HiSeq 2000 (38)
Illumina (9)
Illumina HiSeq 2500 (ILLUMINA) (6)
ILLUMINA, Illumina HiSeq 2500 (5)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (5)
Illumina Genome Analyzer II (5)
Illumina HiSeq 2500, ILLUMINA (3)
HiSeq X Ten, ILLUMINA (3)
ILLUMINA, Illumina HiSeq 2000 (3)
Illumina MiSeq (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina MiSeq, NextSeq 500, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA, Affymetrix GeneChip Scanner 3000 7g (1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
AB SOLiD 4 System, Illumina HiSeq 2000 (1)
Illumina CytoSNP 12 bead array, nanostring (1)
Human Cardio Metabochip (1)
OXFORD_NANOPORE, ILLUMINA, MinION, HiSeq X Ten (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina 450K array, ILLUMINA, Illumina HiSeq 2000, NextSeq 500 (1)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA (1)
PacBio RS II, PACBIO_SMRT (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina_450K (1)

Instrument Platform

Illumina NovaSeq 6000 (186)
Illumina HiSeq 2000 (179)
NextSeq 500 (177)
Illumina HiSeq 2500 (137)
Illumina HiSeq 4000 (90)
NextSeq 550 (56)
Scanning hardware (46)
Illumina MiSeq (45)
Axon GenePix 4000B scanning hardware (44)
GenePix 4000B [Axon Instruments] (39)
Axon- GenePix4000B (36)
GenePix 4000A [Axon Instruments] (29)
Illumina HiSeq 1500 (26)
Illumina HiSeq 3000 (24)
NextSeq 2000 (23)
Axon GenePix 4000A scanning hardware (22)
Illumina Genome Analyzer II (21)
ScanArray Express HT [PerkinElmer] (20)
Illumina NovaSeq X (20)
Illumina Genome Analyzer IIx (19)
ScanArray Express HT (19)
ScanArray 5000 [PerkinElmer] (12)
G2565BA DNA microarray scanner [Agilent] (12)
ScanArray 4000 [PerkinElmer] (11)
GenePix Personal 4100A [Axon Instruments] (11)
Other (11)
418 [Affymetrix] (11)
G2565AA DNA microarray scanner [Agilent] (9)
Variable Atmosphere Incubator (9)
ScanArray 4000XL [PerkinElmer] (9)

Publication Date

2010 (2277)
2013 (1912)
2011 (1540)
2012 (1466)
2014 (1409)
2015 (1088)
2008 (792)
2009 (707)
2016 (698)
2007 (453)
2025 (382)
2024 (376)
2022 (334)
2023 (327)
2026 (324)
2021 (291)
2020 (269)
2006 (249)
2019 (222)
2018 (222)
2005 (209)
2017 (164)
2004 (100)
2003 (19)
2002 (4)

UNIPROT ID/AC

1433B_HUMAN (2)
1433F_HUMAN (2)
1433G_HUMAN (2)
1433S_HUMAN (2)
1433T_HUMAN (2)
1433Z_HUMAN (2)
2A5A_HUMAN (2)
2A5B_HUMAN (2)
2A5D_HUMAN (2)
2A5E_HUMAN (2)
2A5G_HUMAN (2)
2AAA_HUMAN (2)
2AAB_HUMAN (2)
2ABA_HUMAN (2)
2ABB_HUMAN (2)
2ABD_HUMAN (2)
2ABG_HUMAN (2)
3BP1_HUMAN (2)
3BP5L_HUMAN (2)
3HAO_HUMAN (2)
P34057 (1)
O54828 (1)
Q9WVL4 (1)
P15409 (1)
O35599 (1)
Q8CFY0 (1)
P09174 (1)
Q3U6B2 (1)
P20443 (1)
P27600 (1)

ENSEMBL ID

ENSG00000170477 (76)
ENSG00000229353 (51)
ENSG00000147251 (29)
ENSG00000247315 (17)
ENSG00000204131 (10)
ENSG00000214897 (3)
ENSG00000176092 (2)

CHEBI ID

CHEBI:30769 (40)
CHEBI:15428 (39)
CHEBI:15891 (33)
CHEBI:16919 (33)
CHEBI:16737 (30)
CHEBI:16811 (29)
CHEBI:17568 (29)
CHEBI:17368 (29)
CHEBI:28044 (28)
CHEBI:25094 (28)
CHEBI:32816 (28)
CHEBI:17822 (27)
CHEBI:18186 (27)
CHEBI:16704 (27)
CHEBI:18237 (27)
CHEBI:16449 (27)
CHEBI:26271 (26)
CHEBI:28300 (26)
CHEBI:25017 (26)
CHEBI:27266 (26)
CHEBI:6650 (26)
CHEBI:17268 (26)
CHEBI:18012 (26)
CHEBI:17154 (26)
CHEBI:17895 (26)
CHEBI:15354 (25)
CHEBI:16356 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:29108 (1)

Metabolite Name

Creatine (36)
Hypoxanthine (32)
Uracil (30)
Adenosine (27)
Creatinine (27)
Taurine (26)
Adenine (26)
Inosine (26)
Glycine (24)
Betaine (24)
L-Histidine (24)
Choline (24)
Guanosine (24)
Methionine (23)
Guanine (23)
Pyroglutamic acid (22)
Xanthine (22)
Ornithine (21)
Citric acid (21)
Cytidine (21)
L-Valine (21)
L-Tyrosine (21)
Histidine (20)
L-Proline (20)
Histamine (20)
L-Glutamine (20)
Uridine (20)
Lysine (19)
Tyrosine (19)
Riboflavin (19)

First Public Date

2025 (228)
2024 (222)
2026 (198)
2023 (190)
2022 (163)
2014 (157)
2020 (123)
2021 (117)
2018 (80)
2017 (80)
2019 (76)
2016 (42)
2013 (40)
2015 (34)
2012 (1)
2011 (1)

Modelling Approach

Ordinary differential equation model (3)

Study status

Recruiting (7)
Not yet recruiting (3)
Completed (3)
Enrolling by invitation (1)
Terminated (1)
Not provided (1)

Lab affiliation

Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States (7)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (5)
LPHI, Univ Montpellier, CNRS, INSERM, Montpellier, France (4)
Biological Chemistry Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, United States (3)
Center for Translational Vision Research, Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; Department of Physiology and Biophysics, Department of Chemistry, Department of Molecular Biology and Biochemistry; University of California, Irvine, Irvine, CA, 92697, USA (3)
Bioanalytics, Leibnizinstitut für analytische Wissenschaften-ISAS-e.V., Germany (2)
Biozentrum, University of Basel, Switzerland (2)
Copenhagen Center for Glycomics and Department of Cellular and Molecular Medicine, Faculty of Health Sciences, University of Copenhagen, DK-2200 Copenhagen N, Denmark (2)
Department of Biochemistry and Molecular Biology School of Medicine, Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, OR 97239, USA (2)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (2)
Fudan University (2)
Keck MS & Proteomics Resource Yale School of Medicine (2)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil. (2)
Proteomic Plateform Necker - SFR Necker - US24 (2)
Proteomic Unit, Department of Biochemistry, Institute of Chemistry, Federal University of Rio de Janeiro, Av Athos da Silveira Ramos, 149, CT- A-542, Cidade Universitária 21941-909 Rio de Janeiro, RJ, Brazil (2)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (2)
de Duve Institute UCLouvain and WELBIO (2)
1 Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA 2 Department of Cell Biology, Harvard Medical School, Boston, MA, USA (1)
1 Department of Genetics, Harvard Medical School, Boston, MA 02115 (1)
1. Department of Pediatrics, David Geffen School of Medicine, University of California, Los Angeles, CA. 2. Neonatal/Congenital Heart Laboratory, Cardiovascular Research Laboratory, David Geffen School of Medicine, University of California, Los Angeles, CA. (1)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Akhilesh Pandey, M.D., Ph.D. Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (1)
Amsterdam UMC, University of Amsterdam, Department of Medical Biochemistry, Meibergdreef 9, 1105 AZ Amsterdam, the Netherlands. (1)
Assistant Professor Departments of Chemistry and Biological Sciences Vanderbilt Unversity (1)
Assistant Professor of Medicine Department of Medicine Tulane University School of Medicine 1430 Tulane Avenue, New Orleans, LA,70114 (1)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (1)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
Associate Professor, Department of Chemistry and Biochemistry, University of Maryland, College Park (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK (1)

Keyword

Omenn Syndrome (2)
Bare Lymphocyte Syndrome (BLS) (2)
Combined Immune Deficiency (CID) syndromes (2)
Wiskott-Aldrich Syndrome (2)
Leukocyte adhesion deficiency (2)
Chronic granulomatous disease (CGD) (2)
IPEX syndrome (2)
Autoimmune Lymphoproliferative Syndrome (ALPS) (2)
Hemophagocytic Lymphohistiocytosis (HLH) syndromes (2)
Lymphocyte Signaling defects (2)
Congenital Amegakaryocytic Thrombocytopenia (CAMT) (2)
Osteopetrosis (2)
Hurler syndrome (MPS I) (2)
Metachromatic leukodystrophy (MLD) (2)
X-linked adrenoleukodystrophy (ALD) (2)
Gaucher Disease (2)
Thalassemia major (2)
Sickle cell disease (SCD) (2)
Diamond Blackfan Anemia (DBA) (2)
Inflammatory Bowel Disease (2)
Perla Occipital System (1)
E-health (1)
Culture (1)
Health economy (1)
Home care (1)
Chediak - Higashi Syndrome (1)
Severe Combined Immune Deficiency (SCID) (1)
Combined Variable Immune Deficiency (CVID) syndrome (1)
Dyskeratosis Congenita (DC) (1)
Mucopolysaccharidoses (1)

IsPrivate

False (3)

Submitter Keywords

Manuscript Accepted (1)

Classification

protozoa (6)
viruses (4)
bacteria (1)

Modification

4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (7257)
ChIP-seq (1301)
Comparative genomic hybridization by array (1105)
RNA-seq of coding RNA (954)
ChIP-chip by tiling array (905)
Other (286)
Unknown experiment type (281)
ChIP-chip by array (264)
Methylation profiling by array (228)
RNA-seq of non coding RNA (168)
Methylation profiling by high throughput sequencing (128)
Genotyping by array (104)
DNA-seq (97)
RNA-seq of coding RNA from single cells (75)
Transcription profiling by RT-PCR (57)
Transcription profiling by tiling array (50)
MicroRNA profiling by array (45)
Cell line - High-throughput sequencing (42)
RNA-seq of total RNA (39)
High-throughput sequencing (26)
Proteomic profiling by array (24)
Animal - High-throughput sequencing (22)
RNAi profiling by array (19)
RIP-seq (18)
CLIP-seq (16)
Transcription profiling by SAGE (15)
Human - High-throughput sequencing (13)
ATAC-seq (13)
Hi-C (12)
4C (9)

Release Date

2022 (2733)
2010 (2519)
2021 (2499)
2023 (2424)
2013 (2398)
2025 (2378)
2020 (2020)
2014 (2008)
2024 (1940)
2015 (1868)
2011 (1853)
2012 (1843)
2016 (1537)
2019 (1514)
2018 (1408)
2017 (1197)
2008 (926)
2009 (902)
2007 (562)
2026 (375)
2006 (343)
2005 (279)
2004 (150)
2003 (51)
2002 (45)
2001 (34)
2000 (33)
1999 (19)
1998 (15)
1997 (5)

Location

United States (5)
Japan (4)
India (3)
North America (2)
Australia (2)
France (2)
Denmark (1)
United Kingdom (1)
Spain (1)
Belgium (1)
Austria (1)
Germany (1)
Sweden (1)

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Gestational palmitic acid suppresses embryonic GATA-binding protein 4 signaling and causes congenital heart disease

Dysregulated maternal fatty acid metabolism increases the risk of congenital heart disease (CHD) in offspring with an unknown mechanism, and the effect of folic acid fortification in preventing CHD is controversial. Using gas chromatography coupled to either a flame ionization detector or mass spect...

2023-03-24 | MTBLS6982 | MetaboLights

Transcriptomics integrated with metabolomics reveals partial molecular mechanisms of nutritional risk and neurodevelopment in children with congenital heart disease

PURPOSE: To explore molecular mechanisms affecting nutritional risk and neurodevelopment in children with congenital heart disease (CHD) by combining transcriptome and metabolome analysis.

METHODS: A total of 26 blood and serum samples from 3 groups of chil...

2024-10-25 | MTBLS10118 | MetaboLights

Array CGH in congenital heart disease

Congenital heart disease (CHD) is the most frequent birth defect and affects nearly 1% of newborns. The etiology of CHD is largely unknown and only a small percentage can be assigned to environmental risk factors such as maternal diseases or exposure to mutagenic agents during pregnancy. Chromosomal...

ORGANISM(S): Homo sapiens

2008-05-11 | E-GEOD-7527 | biostudies-arrayexpress

Transcriptional Atlas of Cardiogenesis Maps Congenital Heart Disease Interactome

Mammalian heart development is built on highly conserved molecular mechanisms with polygenetic perturbations resulting in a spectrum of congenital heart diseases (CHD). However, the transcriptional landscape of cardiogenic ontogeny that regulates proper cardiogenesis remains largely based on candida...

ORGANISM(S): Mus musculus

2014-05-19 | E-GEOD-51483 | biostudies-arrayexpress

Array-CGH in Chinese children with congenital heart disease

We used Affymetrix CytoScan750K array to detect the pathogenic copy number variations in 7 Chinese children with congenital heart disease

ORGANISM(S): Homo sapiens

2021-10-01 | E-MTAB-8315 | biostudies-arrayexpress

Screening for chromosomal aberrations by array CGH in 74 patients with congenital hypothyroidism

Congenital Hypothyroidism occurs in 1:3500 live births and is therefore the most common congenital endocrine disorder. A spectrum of defective thyroid morphology, termed thyroid dysgenesis, represents 80% of permanent CH cases. Although several candidate genes have been implicated in thyroid develop...

ORGANISM(S): Homo sapiens

2010-05-31 | E-GEOD-18152 | biostudies-arrayexpress

Pulmonary valve prostheses: patient's lifetime procedure load and durability. Evaluation of the German National Register for Congenital Heart Defects.

Not available

S-EPMC8929479 | biostudies-literature

Congenital hypothryrodism and male rat liver: control vs congenital hypothryoidism

Transcriptional profiling of rat liver comparing male rats with congenital hypothyrodism (CH) vs intact at adulhood. Here we studied how CH influences liver gene expression program in adulthood. Thyroid hormones are required for normal growth and development in mammals. Congenital-neonatal hypothyro...

ORGANISM(S): Rattus norvegicus

2012-03-10 | E-GEOD-32705 | biostudies-arrayexpress

Transcription profiling of wild type and Rpe65-/- mouce retinae to characterize gene response in Rpe65-/- mouse model of Lebers congenital amaurosis during progression of the disease.

To characterize gene response in RPE65-/- mouse model of Leber's congenital amaurosis during progression of the disease, we analyzed differential gene expression in retinae early in the development of the disease, namely before and at the onset of photoreceptor cell death in knock-out mice of 2, 4 a...

ORGANISM(S): Mus musculus

2007-09-07 | E-GEOD-3249 | biostudies-arrayexpress

Education as important predictor for successful employment in adults with congenital heart disease worldwide.

Not available

S-EPMC6849520 | biostudies-literature