differential abundant proteins: in vitro activity

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Proteomics (34)
Metabolomics (3)

Organisms

Homo sapiens (10)
Mus musculus (4)
Arabidopsis thaliana (3)
Escherichia coli (3)
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Mycobacterium tuberculosis H37Rv (1)
Mycobacteroides abscessus (1)
Mycobacteroides abscessus subsp. abscessus (1)
Porphyromonas gingivalis (1)
Raphanus sativus (1)
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 (1)
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 (1)
Salmonella enterica subsp. enterica serovar Typhi str. CT18 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Sus scrofa domesticus (1)
Synechococcus elongatus PCC 7942 = FACHB-805 (1)
Synechocystis sp. PCC 6803 substr. Kazusa (1)

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pride (28)
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Disease

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Technology Type

Mass Spectrometry (28)
Shotgun proteomics (18)
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CHEBI ID

CHEBI:1427 (1)
CHEBI:15603 (1)
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CHEBI:15939 (1)
CHEBI:16016 (1)
CHEBI:16123 (1)
CHEBI:16414 (1)
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CHEBI:16765 (1)
CHEBI:16850 (1)
CHEBI:17154 (1)
CHEBI:17226 (1)
CHEBI:17409 (1)
CHEBI:17418 (1)
CHEBI:17634 (1)
CHEBI:17766 (1)
CHEBI:17878 (1)
CHEBI:18015 (1)
CHEBI:2131 (1)
CHEBI:22652 (1)
CHEBI:2443 (1)
CHEBI:26092 (1)
CHEBI:27655 (1)
CHEBI:28716 (1)
CHEBI:28768 (1)
CHEBI:28777 (1)

Metabolite Name

Apiole (2)
L-Leucine (2)
((4r)-4-((3r,5r,7r,9s,10s,12s,13r,14s,17r)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoyl)lysine (1)
((4r)-4-((3r,5r,9s,10s,12s,13r,14s,17r)-3,12-dihydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoyl)glycylglycine (1)
((4r)-4-((3r,5s,7r,9s,10s,12s,13r,14s,17r)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoyl)glycylglycine (1)
((4r)-4-((3r,5s,7r,9s,10s,12s,13r,14s,17r)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoyl)valine (1)
((4r)-4-((3r,5s,7r,9s,10s,13r,14s,17r)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)-2,2-dimethylpentanoyl)glycine (1)
((r)-4-((3r,5s,7s,8r,9s,10s,12s,13r,14s,17r)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoyl)glycine (1)
(+)-.gamma.-tocopherol (1)
(+)-camphor (1)
(+)-catechin (1)
(+)-fluprostenol methyl ester (1)
(+)-isocorydine (1)
(+)-pinoresinol (1)
(-)-(3s)-3-hydroxyquinine (1)
(-)-.alpha.-kainic acid (1)
(-)-Medicarpin (1)
(-)-Tylocrebrine (1)
(-)-atropine (1)
(-)-caryophyllene oxide (1)
(-)-corey lactone diol (1)
(-)-quebrachitol (1)
(.+/-.)-cromakalim (1)
(.+/-.)-dropropizine (1)
(.+/-.)-nuarimol (1)
(1r,4ar,5s)-5-(3-hydroxy-3-methylpent-4-enyl)-1,4a-dimethyl-6-methylidene-3,4,5,7,8,8a-hexahydro-2h-naphthalene-1-carboxylic acid (1)
(1r,4as,5r,8as)-5-(5-hydroxy-3-methylpentyl)-1,4a-dimethyl-6-methylidene-3,4,5,7,8,8a-hexahydro-2h-naphthalene-1-carboxylic acid (1)
(1s,2r,4as,6ar,6br,10s,12ar,14bs)-1,2,6b,9,9,12a-hexamethyl-10-[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy-2,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydro-1h-picene-4a,6a-dicarboxylic acid (1)
(1s,2r,4s,9r,10r,14s,15s,17s)-9-(furan-3-yl)-1-hydroxy-15-[(1r)-1-hydroxy-2-methoxy-2-oxoethyl]-10,14,16,16-tetramethyl-7,18-dioxo-3,8-dioxapentacyclo[12.3.1.0,.0,.0,]octadecan-17-yl 2-methylpropanoate (1)
(2,4-dichlorophenoxy)acetic acid, ethyl ester (1)

Lab affiliation

Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Centre de Recherche en Cancérologie de Marseille, CRCM Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes 27 Boulevard Leï Roure CS30059 13273 Marseille Cedex 09 France (1)
Charles Perkins Centre, University of Sydney, Australia (1)
Department of Biomedical Sciences, unit of Diagnostic Bacteriology, Institute of Tropical Medicine (1)
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Pathology and Laboratory Medicine University of Vermont Larner College of Medicine Burlington, Vermont, 05405, USA (1)
Department of Tumor Biology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Dept. of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, 94305-5176, USA (1)
Division of Immunobiology, Cincinnati Children’s Hospital, Cincinnati, OH Department of Pediatrics, University of Cincinnati, Cincinnati OH Correspondence: (1)
Head of the Department of Protein Science, Division of Systems Biology at the Royal Institute of Technology (KTH), Stockholm, Sweden (1)
Institute of Molecular Systems Biology & Department of Health Sciences and Technology, ETH Zurich, Switzerland (1)
Instituto de Bioquimica Vegetal y Fotosintesis Consejo Superior de Investigaciones Cientificas Avda. Americo Vespucio, 49 Sevilla Spain (1)
Instituto de Bioquimica Vegetal y Fotosintesis. CSIC (1)
KU Leuven-VIB Center for Cancer Biology (1)
LIST-ERIN-BEAP Bascharage1 Luxembourg (1)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (1)
Lipolysis and Bacterial Pathogenicity team, LISM UMR7255, CNRS, Aix-Marseille Univ. , IMM FR3479, Marseille, France (1)
Lipolysis and bacterial Pathogenicity Team LISM UMR7255 CNRS 31, chemin Joseph Aiguier - CS 70071 F-13402 marseille cedex 09 (1)
Orthopedic Oncology Institute, Department of Orthopedic Surgery, Tangdu Hospital, Fourth Military Medical University, Xi’an, China (1)
Professor Deaprtment of Botany University of Delhi Delhi-110007 (1)
Proteomic Platform of Institut de Microbiologie de la Méditerranée CNRS 3479 (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital,McGill University, Montréal, Québec,Canada (1)
The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University, Rehovot 76100, Israel (1)
The Scripps Research Institute, Department of Molecular Medicine, La Jolla, California, USA (1)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (1)
University of Warsaw, Warsaw, Poland (1)
Université de Paris, Inserm, UMRS-1144 Optimisation Thérapeutique en Neuropsychopharmacologie (1)

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Comprehensive Analysis of leaf cuticle proteome from B. juncea, B. nigra, B. rapa, and R. sativus leaf shed lights on diverse functions of differentially abundant classical and non-classical secretory targets Comprehensive Analysis of leaf cuticle proteome from B. juncea, B. nigra, B. rapa, and R. sativus leaf shed lights on diverse functions of differentially abundant classical and non-classical secretory targets

The primary sensor for environmental cues, the cuticle is an essential plant agronomical trait in crop plants. The extracellular cuticle proteome in crop plants is little understood. We performed a quantitative shotgun proteomics analysis on four economically relevant Brassicaceae members: B. juncea...

ORGANISM(S): Brassica nigra Brassica juncea Raphanus sativus Brassica rapa

2025-07-30 | PXD056855 | Pride

Brassica agrowaste cutinsome differential abundant proteins: in vitro activity n lc msms Secretory protein signalp software

Middle Island Sinkhole Microbial Mat - Seasonality

Samples from benthic phototrophic microbial mats of Middle Island Sinkhole, Lake Huron, MI, USA. Peptides labeled in vitro for quantitative analysis by diDO-IPTL (Waldbauer et al. 2017 Anal. Chem.).

ORGANISM(S): Microbial Mat Metagenome (ncbitaxon:527640)

2022-01-20 | MSV000088706 | MassIVE

Differential Proteomic Analysis of Bordetella pertussis OMV

Differential proteomic analysis of outer membrane vesicles from Bordetella pertussis (two strains: Bvg+ and Bvg-)

ORGANISM(S): Bordetella Pertussis (ncbitaxon:520)

2017-11-09 | MSV000081702 | MassIVE

Synthesis and Anti-mycobacterial Activity of Novel Medium-chain β-Lactone Derivatives: A Multi-Target Strategy to combat Mycobacterium abscessus and other Pathogenic Mycobacteria

Targeting the enzymes involved in mycobacterial lipid metabolism; which are mainly serine and cysteine enzymes (i.e., (Ser/Cys)-based enzymes; has emerged as a promising strategy to combat not only M. tuberculosis, but also other chronic non-tuberculous mycobacterial infections like those caused by ...

ORGANISM(S): Mycobacterium tuberculosis Mycobacteroides abscessus subsp. abscessus Bacteria

2025-04-23 | PXD057836 | Pride

Activity-based protein profiling multitarget inhibitor-like affinity-based probes drug susceptibility intracellular activity proteomic analysis mycobacteria lc-msms

LED lamps induce a differential regulation of proteins and enhance somatic embryo maturation in Carica papaya

The use of light-emitting diode (LED) lamps could be an alternative method to improve somatic embryogenesis, yielding more efficient somatic embryo development and maturation than the use of conventional fluorescent lamps. The aim of this work was to study the influence of light quality on the somat...

ORGANISM(S): Carica papaya

2019-09-11 | PXD009785 | Pride

Clonal propagation Label-free proteomics Carica papaya l. Comparative proteomics led Somatic embryogenesis Light-emitting diode

Disclosing potential therapeutic targets associated with Osimertinib resistance in non-small cell lung cancer cell line H1975

H1975/OSI cell line was induced in vitro through intermittent induction. Cell activity was measured using cell counting kit-8 assay. Uni-omics and multi-omics analyses were conducted on the transcriptomic and proteomic (4D label-free) expression profiles, which involved differential expression analy...

ORGANISM(S): Homo Sapiens

PXD043855 |

Oxadiazolone derivatives against M. tuberculosis

Oxadiazolone (OX) derivatives have been investigated for their antimycobacterial activity against three pathogenic slow-growing mycobacteria: Mycobacterium marinum, Mycobacterium bovis BCG and the avirulent Mycobacterium tuberculosis (M. tb) mc26230. The encouraging MIC values obtained prompted us t...

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2018-09-25 | PXD010255 | Pride

Tuberculosis Lipolytic enzyme inhibitors Activity-based probe (abp) Oxadiazolone

Structural and functional fine mapping of cysteines in mammalian glutaredoxin reveal a hierarchy of susceptibility to oxidative inactivation

Protein-S-glutathionylation (PSSG) is a post-translational modification involving the conjugation of glutathione to reactive protein thiols, which can modulate the activity and structure of key cellular proteins. Glutaredoxins (GLRX) are oxidoreductases that regulate this process by performing the r...

ORGANISM(S): Mus musculus (Mouse)

2023-10-24 | PXD026486 | Pride

Molecular dynamics Glutathione Multiscale modeling Redox S-glutathionylation Quantum mechanics

MST4 promotes MRC2 activity to drive osteosarcoma proliferation

Osteosarcoma is one of the most common types of orthopedic malignancies with an accelerated disease progression and poor prognosis.The purpose of this study was to further investigate the function of Serine/threonine protein kinase 4(MST4) in osteosarcoma and its underlying mechanisms. The expressio...

ORGANISM(S): Homo sapiens (Human)

2026-10-26 | PXD034216 | Pride

Mrc2 Mst4 Osteosarcoma proliferation

Marked increased production of acute phase reactants by skeletal muscle during cancer cachexia

Background Loss of skeletal muscle mass in cancer cachexia is recognized as an independent predictor of mortality. Mechanisms involved in this wasting process and parameters for early diagnosis are not yet clearly defined. As skeletal muscle is considered as a secretory organ, the aim of this prese...

ORGANISM(S): Mus Musculus

2021-01-24 | PXD019433 | panorama

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